Pairwise Alignments

Query, 284 a.a., RNA polymerase sigma factor RpoH from Escherichia coli ECRC98

Subject, 285 a.a., RNA polymerase factor sigma-32 (RefSeq) from Shewanella sp. ANA-3

 Score =  379 bits (974), Expect = e-110
 Identities = 198/287 (68%), Positives = 234/287 (81%), Gaps = 5/287 (1%)

Query: 1   MTDKMQSLALA-PVGN--LDSYIRAANAWPMLSADEERALAEKLHYHGDLEAAKTLILSH 57
           MT + QS+AL  P G+  L++YI +  +  ML A+ E  LA++L   GDL+AAK LI+SH
Sbjct: 1   MTFQTQSMALTVPQGSSSLEAYIHSVTSMTMLDAETEYELAKRLQETGDLQAAKQLIMSH 60

Query: 58  LRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLVSFAVHWIKAEIHEYV 117
           LRFVVH+A+ Y+GYGLPQADLIQEGNIGLMKAV+RF+P+VGVRLVSFAVHWIKAEIHEYV
Sbjct: 61  LRFVVHVAKGYSGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIKAEIHEYV 120

Query: 118 LRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARELGVTSKDVREMESRMAA 177
           L+NWRIVKVATTKAQRKLFFN+RK K RLGWF+ DEV MVA  LGV+  DV EMESRMAA
Sbjct: 121 LKNWRIVKVATTKAQRKLFFNIRKAKTRLGWFSDDEVAMVAENLGVSKADVTEMESRMAA 180

Query: 178 QDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWEEQAANRLTDAMQGLDERSQ 237
           QD  FDLSSD+D D Q  APV YL+D SS+ A+ IE+DNWE  A  RL  A++ LDERSQ
Sbjct: 181 QDPAFDLSSDND-DEQDFAPVHYLEDHSSDLAENIENDNWESNAQGRLLSAIKTLDERSQ 239

Query: 238 DIIRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMKKLRAAIEA 284
            I+RARWLD+D K+TLQELA+ Y VSAER+RQLEKNAM KL+A +EA
Sbjct: 240 HILRARWLDDD-KTTLQELAETYQVSAERIRQLEKNAMNKLKACMEA 285