Pairwise Alignments

Query, 382 a.a., carbamoyl phosphate synthase small subunit from Escherichia coli ECRC98

Subject, 390 a.a., carbamoyl phosphate synthase small subunit (RefSeq) from Shewanella loihica PV-4

 Score =  603 bits (1554), Expect = e-177
 Identities = 298/382 (78%), Positives = 323/382 (84%), Gaps = 1/382 (0%)

Query: 1   LIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI 60
           L KSALLVLEDGT F G AIGA G AVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI
Sbjct: 10  LTKSALLVLEDGTVFSGTAIGADGLAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHI 69

Query: 61  GNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAIADIDTRKLTR 120
           GN GTN  D ES  VHA GL+IRDLPL+ASNFRN + LS YLK +N+V IADIDTRKLTR
Sbjct: 70  GNTGTNSEDTESEAVHACGLIIRDLPLLASNFRNEQSLSDYLKSNNVVGIADIDTRKLTR 129

Query: 121 LLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGG 180
           +LREKGAQ G I+ GD  D A AL  A+AFPGL GMDLAKEVTT + Y W  GSW L GG
Sbjct: 130 ILREKGAQAGAILVGDM-DEAKALAAAKAFPGLKGMDLAKEVTTQKQYQWRSGSWRLVGG 188

Query: 181 LPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSN 240
           LP    E EL + VVAYD+G KRNILRMLVDRGC +T+VPAQT A +VL MNPDGIFLSN
Sbjct: 189 LPSDTPESELKYKVVAYDYGVKRNILRMLVDRGCDVTVVPAQTPAAEVLAMNPDGIFLSN 248

Query: 241 GPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDV 300
           GPGDP PCDYAI AIQ FL+TDIP+FGICLGHQLLALASGAKT+KMKFGHHG NHPV ++
Sbjct: 249 GPGDPEPCDYAIEAIQAFLKTDIPLFGICLGHQLLALASGAKTLKMKFGHHGANHPVSNL 308

Query: 301 EKNVVMITAQNHGFAVDEATLPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGP 360
           EK  VMIT+QNHGFA DE +LPAN++VTHKSLFDG+LQGIH TDKPAFSFQGHPEASPGP
Sbjct: 309 EKGNVMITSQNHGFAADETSLPANVKVTHKSLFDGSLQGIHLTDKPAFSFQGHPEASPGP 368

Query: 361 HDAAPLFDHFIELIEQYRKTAK 382
           HDAAPLFDHFIELIE+YR  AK
Sbjct: 369 HDAAPLFDHFIELIEEYRHNAK 390