Pairwise Alignments

Query, 400 a.a., protein transport protein HofC from Escherichia coli ECRC98

Subject, 408 a.a., type IV pilin assembly protein PilC from Vibrio cholerae E7946 ATCC 55056

 Score =  187 bits (476), Expect = 4e-52
 Identities = 118/397 (29%), Positives = 205/397 (51%), Gaps = 16/397 (4%)

Query: 7   WRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKR--IAINSAQWRGDKSAEVI 64
           +RW GI  +G    G + A S   +   L+ Q +    LK+  +++ +      KS ++ 
Sbjct: 12  YRWKGINSNGKKVSGQMLAISEIEVRDKLKDQHIQIKKLKKGSVSLLARLTHRVKSKDIT 71

Query: 65  ---HQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121
               QLAT+L  G+ + + L L+ + H   + +++L  +   +E G   S A+   S  F
Sbjct: 72  ILTRQLATMLTTGVPIVQALKLVGDNHRKAEMKSILAQITKSVEAGTPLSKAMRTASAHF 131

Query: 122 PPLYQAMIRTGELTGKLDECCFELARQQRAQRQLTDKVKSALRYPIIILAMAIMVVVAML 181
             LY  ++ TGE++G L E    LA  +    QL  KV  AL YP +++ +A+ V   ML
Sbjct: 132 DTLYVDLVETGEMSGNLPEVFERLATYREKSEQLRAKVIKALIYPSMVVLVALGVSYLML 191

Query: 182 HFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGE---WGWLLV---LFGIMLTIANKLLM 235
             V+PEF +++K F   LP  TQ ++ L+ +      W ++ +   +FG+     N   +
Sbjct: 192 TMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQAYSLWAFIAIAAAIFGLKALRKNSFQI 251

Query: 236 RRPTWLIARQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPY 295
           R  T      +L L+ PI+G+++    + +    LA + +AGI  L  +++  +T    +
Sbjct: 252 RLKT-----SRLGLKFPIIGNVLAKASIAKFSRTLATSFAAGIPILASLKTTAKTSGNVH 306

Query: 296 WVQLLTQIQHDISNGHPIWLALKNAGEFSPLCLQLVRTGEASGSLDLMLDNIAHHHRDNT 355
           +   + ++  D + G P+++A++N   F  + LQ+V  GE SG LD ML+ +A  +    
Sbjct: 307 FETAINEVYRDTAAGMPMYIAMRNTEAFPEMVLQMVMIGEESGQLDDMLNKVATIYEFEV 366

Query: 356 MALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHL 392
               DNL  +LEP +++  G ++G LVVAMYLPIF+L
Sbjct: 367 DNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPIFNL 403