Pairwise Alignments

Query, 400 a.a., protein transport protein HofC from Escherichia coli ECRC98

Subject, 419 a.a., type IV pilus biogenesis protein PilC (RefSeq) from Shewanella amazonensis SB2B

 Score =  187 bits (475), Expect = 5e-52
 Identities = 113/397 (28%), Positives = 205/397 (51%), Gaps = 8/397 (2%)

Query: 7   WRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKR-----IAINSAQWRGDKSA 61
           + W G+  DG    G L   S   +   L+ Q + P  +++        ++ +      A
Sbjct: 23  FEWKGLNRDGKKSSGELRGASVAEIKTLLKNQGINPKVVRKKSDGLFGASNKKINAMDIA 82

Query: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121
            V  Q+AT+L AG+ L   + +L + H   + + LL ++ +D++ GI  S+AL P    F
Sbjct: 83  MVTRQIATMLMAGVPLVTTIEILGKGHEKPKMRELLGTILNDIQAGIPLSDALRPHRIYF 142

Query: 122 PPLYQAMIRTGELTGKLDECCFELARQQRAQRQLTDKVKSALRYPIIILAMAIMVVVAML 181
             LY  ++  GE +G LD     +A  +     L  K+K A+ YP  ++ +AI V   +L
Sbjct: 143 DDLYVDLVAAGEHSGSLDTVFDRIATYREKAEALKSKIKKAMFYPAAVVVVAIAVTTLLL 202

Query: 182 HFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGIMLTIANKLLMRRPTWL 241
            FV+P+F  I+ +F   LPA TQ I+ ++ F  +  W   L  I+ +I   +   R +  
Sbjct: 203 LFVVPQFEEIFTSFGAELPAFTQLIINISRFL-QSSWYFFLTAIVGSIWLYVRAHRNSQA 261

Query: 242 I--ARQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPYWVQL 299
           +   + + +L+IP++G ++    + +    LA T +AG+  + G+ES         + + 
Sbjct: 262 VRDRQDEFVLKIPVIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYRKA 321

Query: 300 LTQIQHDISNGHPIWLALKNAGEFSPLCLQLVRTGEASGSLDLMLDNIAHHHRDNTMALA 359
           L +I+ ++  G  + +A++    F  + +Q+V  GE SGSLD ML+ IA+ +        
Sbjct: 322 LLRIRTEVMAGMQMNVAMRTVNLFPDMLIQMVMIGEESGSLDNMLNKIANIYEMQVDDAV 381

Query: 360 DNLAALLEPALLIITGGIIGTLVVAMYLPIFHLGDAM 396
           D L++L+EP ++++ G ++G L+V MYLPIF +G+ +
Sbjct: 382 DGLSSLIEPIMMVVIGTLVGGLIVGMYLPIFQMGNVV 418