Pairwise Alignments

Query, 400 a.a., protein transport protein HofC from Escherichia coli ECRC98

Subject, 406 a.a., general secretion pathway protein F (RefSeq) from Shewanella loihica PV-4

 Score =  142 bits (357), Expect = 2e-38
 Identities = 96/406 (23%), Positives = 195/406 (48%), Gaps = 17/406 (4%)

Query: 7   WRWHGITGDGNAQDGMLWAES--------RTLLLMALQQQMVTPLSLKRIAINSAQW--- 55
           + +  +   G  Q G++ A++        R L LM L+   +TP+  K     S  +   
Sbjct: 4   FEYKALNAQGKQQKGVVEADTARHARGQLRELRLMPLE---ITPVVEKEAKAKSGGFSFK 60

Query: 56  RGDKSAE---VIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSN 112
           RG   AE   +  Q+ATL+ AGL + E L  + +Q    +  +++ ++   + +G + ++
Sbjct: 61  RGISVAELALITRQIATLVAAGLPVEEALKAVGQQCEKDRLASMVMAVRSRVVEGYSLAD 120

Query: 113 ALLPWSEVFPPLYQAMIRTGELTGKLDECCFELARQQRAQRQLTDKVKSALRYPIIILAM 172
           ++  +  +F  LY+AM+ +GE +G L+     LA     ++QL  K+  A+ YPI++  +
Sbjct: 121 SMAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKTKMTQAMIYPIVLTLV 180

Query: 173 AIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGIMLTIANK 232
           AI V+  +L  V+P+    ++     LP  TQ ++  +DF  ++G +++   I L +  K
Sbjct: 181 AISVIAILLAAVVPQVVGQFEHMGQELPWTTQFLIASSDFVRDYGLIVIGVIIALVVGAK 240

Query: 233 LLMRRPTWLIARQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMR 292
            L+R     +     +L++P++G + +G    +    L++  ++ +  L  +    E + 
Sbjct: 241 QLLRSAANRMKYDSAILKMPVVGRVSKGLNTARFARTLSILTASSVPLLDAMRIASEVLM 300

Query: 293 CPYWVQLLTQIQHDISNGHPIWLALKNAGEFSPLCLQLVRTGEASGSLDLMLDNIAHHHR 352
                  + +    +  G  +  AL N   F P+ L ++ +GE SG L+ ML+  A +  
Sbjct: 301 NVRVRAAVEEATARVREGTSLGAALANTKLFPPMMLYMITSGEKSGQLEQMLERAADNQD 360

Query: 353 DNTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHLGDAMSG 398
               +  +    + EP L++    ++  +V+A+  PI  L + +SG
Sbjct: 361 REFESNVNIALGVFEPMLVVSMAAVVLFIVLAILQPILELNNMISG 406