Pairwise Alignments

Query, 400 a.a., protein transport protein HofC from Escherichia coli ECRC98

Subject, 422 a.a., type II secretion system protein (RefSeq) from Shewanella loihica PV-4

 Score =  193 bits (491), Expect = 7e-54
 Identities = 115/398 (28%), Positives = 208/398 (52%), Gaps = 7/398 (1%)

Query: 7   WRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKRIAI----NSAQWRGDKSAE 62
           + W G   DG    G L   S   +   L+ Q V P  +K+ A     +  + +    A 
Sbjct: 26  FEWKGTNRDGKKTSGELRGTSPAEIKAQLKSQGVNPKVVKKKAEPLFKSDPKIKAMDIAM 85

Query: 63  VIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVFP 122
           +  Q+AT+L AG+ +   L +L   H   + + LL ++  D++ GI  S++L P  + F 
Sbjct: 86  ITRQIATMLAAGVPIVTTLEMLGRGHEKPRMRELLGTIVADVQSGIPLSDSLKPHRQYFD 145

Query: 123 PLYQAMIRTGELTGKLDECCFELARQQRAQRQLTDKVKSALRYPIIILAMAIMVVVAMLH 182
            LY  ++  GE +G LD     +A  +     L  K+K A+ YP  ++ +AI V   +L 
Sbjct: 146 DLYVDLVGAGEHSGSLDAVFDRIATYREKAEALKSKIKKAMFYPAAVIVVAIAVTTLLLL 205

Query: 183 FVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGIMLTI--ANKLLMRRPTW 240
           FV+P+F  I+  F   LPA TQ I++++ +  +  W   + GI+++I    K  ++   +
Sbjct: 206 FVVPQFEDIFAGFGAELPAFTQMIVSISRWL-QSSWYFFVIGIVVSIWSFKKAHLKSAGF 264

Query: 241 LIARQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPYWVQLL 300
                +L+L+IPI+G ++    + +    LA T +AG+  + G+ES         +   L
Sbjct: 265 RNKVDELVLKIPIIGEILHKAAMARFARTLATTFAAGVPLIDGLESAAGASGNYVYRSAL 324

Query: 301 TQIQHDISNGHPIWLALKNAGEFSPLCLQLVRTGEASGSLDLMLDNIAHHHRDNTMALAD 360
           T+++ ++ +G  + +A++  G F  + +Q+V  GE SG LD ML+ IA+ +        D
Sbjct: 325 TKVRTEVMSGMQMNVAMRTTGLFPDMLIQMVMIGEESGGLDDMLNKIANIYEMQVDDAVD 384

Query: 361 NLAALLEPALLIITGGIIGTLVVAMYLPIFHLGDAMSG 398
            L++L+EP ++++ G ++G L++ MYLPIF +G+ + G
Sbjct: 385 GLSSLIEPMMMVVIGTLVGGLIIGMYLPIFQMGNVVGG 422