Pairwise Alignments

Query, 400 a.a., protein transport protein HofC from Escherichia coli ECRC98

Subject, 405 a.a., type II secretion system protein (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  145 bits (365), Expect = 3e-39
 Identities = 90/328 (27%), Positives = 166/328 (50%), Gaps = 2/328 (0%)

Query: 66  QLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVFPPLY 125
           Q  TL +AG+ +++ L +L  Q  SK+ + +   +A  +  G    +A      VF  LY
Sbjct: 72  QFRTLFQAGIPITQLLQVLQNQTESKRLKQIAADMAQSIVGGSTLYDAFRAHPRVFSELY 131

Query: 126 QAMIRTGELTGKLDECCFELARQQRAQRQLTDKVKSALRYPIIILAMAIMVVVAMLHFVL 185
            +M+R GE +G L +    L      + ++   +KSA+RYP ++++  +     +L+ V+
Sbjct: 132 CSMMRAGEASGALGDVMERLVYLLEHEHKIRSDIKSAMRYPKMVVSALLAAFFILLNVVI 191

Query: 186 PEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGIMLTIAN-KLLMRRPTWLIAR 244
           P+F  I+      LP  TQ  M +      + W +VL  ++  IA  K  +R P     R
Sbjct: 192 PKFVVIFARAKIELPWPTQVAMGMHYIMTTY-WPIVLGLLVAAIAGYKWWVRTPAGKYWR 250

Query: 245 QKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPYWVQLLTQIQ 304
              LL +PI+G +++   + +  +I ++ QS+G+T L  ++ +  T+          +IQ
Sbjct: 251 DYTLLHVPIIGPVLQKSVMARFASIFSILQSSGVTVLDALDVLTNTIGNAAIASEFRKIQ 310

Query: 305 HDISNGHPIWLALKNAGEFSPLCLQLVRTGEASGSLDLMLDNIAHHHRDNTMALADNLAA 364
             +  G  I   LK+A  F+PL + +V  GE SGSLD ML+++A H+ +        ++ 
Sbjct: 311 DKLREGRGIADPLKSAKFFTPLVINMVAIGEESGSLDSMLNDVARHYDEEVEYAVAGMSE 370

Query: 365 LLEPALLIITGGIIGTLVVAMYLPIFHL 392
            + P L+I    ++G   +A+++P++ L
Sbjct: 371 AIGPVLIIALAAVVGFFALAIFMPMWDL 398