Pairwise Alignments

Query, 400 a.a., protein transport protein HofC from Escherichia coli ECRC98

Subject, 423 a.a., type II secretion system protein (RefSeq) from Shewanella sp. ANA-3

 Score =  191 bits (484), Expect = 4e-53
 Identities = 113/399 (28%), Positives = 206/399 (51%), Gaps = 8/399 (2%)

Query: 7   WRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKR-----IAINSAQWRGDKSA 61
           + W G+  DG    G L   S   +   L+ Q V P ++++       +  A+      A
Sbjct: 26  FEWKGLNRDGQKTSGELRGASAAEIRSQLKSQGVNPKTVRKQSAALFKLGDAKISPMDIA 85

Query: 62  EVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALLPWSEVF 121
            +  Q+AT+L AG+ L   + LL   H   + + LL S+  +++ GI  S++L P    F
Sbjct: 86  MITRQIATMLAAGVPLVTTIELLGRGHEKAKMRELLGSILSEIQSGIPLSDSLRPHRRYF 145

Query: 122 PPLYQAMIRTGELTGKLDECCFELARQQRAQRQLTDKVKSALRYPIIILAMAIMVVVAML 181
             LY  ++  GE +G LD     +A  +     L  K+K A+ YP  ++ +AI+V   +L
Sbjct: 146 DDLYVDLVAAGEHSGSLDVVFDRIATYREKSEALKSKIKKAMFYPAAVVVVAILVTTLLL 205

Query: 182 HFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGIMLTIANKLLMRRPTWL 241
            FV+P+F  I+K F   LPA TQ ++ ++    +  W + L  I+  +   +   R + +
Sbjct: 206 LFVVPQFEEIFKGFGAELPAFTQLVLHISR-GLQSSWYIFLGAIVAGVFLFVRAHRNSQM 264

Query: 242 IARQ--KLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPYWVQL 299
           +  +  + +L+IP +G ++    + +    LA T +AG+  + G+ES         + + 
Sbjct: 265 VRDRVDEAVLKIPAIGPILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNAVYRKA 324

Query: 300 LTQIQHDISNGHPIWLALKNAGEFSPLCLQLVRTGEASGSLDLMLDNIAHHHRDNTMALA 359
           + +I+ ++  G  + +A++  G F  + +Q+V  GE SGSLD ML+ +A+ +        
Sbjct: 325 ILKIRQEVMAGMQMNVAMRTTGLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAV 384

Query: 360 DNLAALLEPALLIITGGIIGTLVVAMYLPIFHLGDAMSG 398
           D L++L+EP ++++ G ++G L+VAMYLPIF +G  + G
Sbjct: 385 DGLSSLIEPIMMVVIGTVVGGLIVAMYLPIFQMGKVVGG 423