Pairwise Alignments

Query, 461 a.a., type II secretion system protein GspE from Escherichia coli ECRC98

Subject, 569 a.a., type IV-A pilus assembly ATPase PilB (RefSeq) from Shewanella loihica PV-4

 Score =  325 bits (833), Expect = 2e-93
 Identities = 183/424 (43%), Positives = 262/424 (61%), Gaps = 17/424 (4%)

Query: 38  LDALHFATTKRIEITCWTRQQMEGHASRTQQTLPVAVQEKHQPKAELLTRTLQSALEQRA 97
           LD +   +   IEIT   ++Q E     +    P+ +          + + L  A+ + A
Sbjct: 153 LDGIDEDSLSGIEITDTDKRQEEQQGDASDDA-PIVIY---------INKILTDAIRKGA 202

Query: 98  SDIHIEPADNAYRIRLRIDGVLHPLPDVSPDAGVALTARLKVLGNLDIAEHRLPQDGQFT 157
           SD+H EP +  YRIR RIDG+LH + +   +    ++ARLKV+  LDIAE R+PQDG+  
Sbjct: 203 SDLHFEPYEKRYRIRFRIDGILHEVSEPPVNLSGRISARLKVMSKLDIAERRVPQDGRIK 262

Query: 158 VELAGN-AVSFRIATLPCRGGEKMVLRLLQQVSQALDVNTLGMQPLQLAGFAHALQQPQG 216
           ++L+   ++ FR++TLP   GEK+V+R+L   S  L +  LG +  Q   +   L +PQG
Sbjct: 263 MKLSRTKSIDFRVSTLPTIWGEKIVMRILDSSSAQLGIEKLGYENDQRKLYEEMLAKPQG 322

Query: 217 LVLVTGPTGSGKTVTLYSALQKLNTADINICSVEDPVEIPIAGLNQTQIHPRAGLTFQGV 276
           ++LVTGPTGSGKTV+LY+ L  LNT + NI + EDPVEI + G+NQ  I+ +AGLTF   
Sbjct: 323 MILVTGPTGSGKTVSLYTGLNILNTEERNISTAEDPVEINLEGVNQVHINLKAGLTFASA 382

Query: 277 LRALLRQDPDVIMIGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTCETLVRLQQMGVARW 336
           LR+ LRQDPDV+M+GEIRD ETAEIAIKAAQTGHLVLSTLHTNS  ETL RL  MGV  +
Sbjct: 383 LRSFLRQDPDVVMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLINMGVPGY 442

Query: 337 MLSSALTLVIAQRLVRKLCPHCRRQQGEPIH--IPVNVWPSPLPH----WQAPGCVHCYH 390
            ++S++ L+IAQRL R+LC  CR+ +  P H  + +    + +      ++  GC  C  
Sbjct: 443 NIASSVNLIIAQRLARRLCTECRQPEEVPEHELLKLGFTQAQIDEGFTVYKPVGCDLCSG 502

Query: 391 GFYGRTALFEVLPITPVIRQLISANTDVESLETHARQAGMRTLFENGCLAVEQGLTTFEE 450
           G+ GR  ++EV+ ++  I + I    +   + T A++ GMR L E+G   V  G+T+  E
Sbjct: 503 GYKGRVGIYEVMKMSDEIARTIMEGGNSLQIATQAKEQGMRDLRESGLRKVIAGVTSIAE 562

Query: 451 LIRV 454
           + RV
Sbjct: 563 INRV 566