Pairwise Alignments

Query, 461 a.a., type II secretion system protein GspE from Escherichia coli ECRC98

Subject, 569 a.a., type IV-A pilus assembly ATPase PilB (RefSeq) from Shewanella sp. ANA-3

 Score =  333 bits (853), Expect = 1e-95
 Identities = 186/424 (43%), Positives = 260/424 (61%), Gaps = 17/424 (4%)

Query: 38  LDALHFATTKRIEITCWTRQQMEGHASRTQQTLPVAVQEKHQPKAELLTRTLQSALEQRA 97
           L  +  A    IE+T   ++Q E +A       P+ +          + + L  A+ + A
Sbjct: 153 LSGMDEAALAGIEVTDTDKRQEE-NAGEASDDAPIVIY---------INKILTDAIRKGA 202

Query: 98  SDIHIEPADNAYRIRLRIDGVLHPLPDVSPDAGVALTARLKVLGNLDIAEHRLPQDGQFT 157
           SD+H EP +  YRIR RIDG+LH + +        L+ARLKV+  LDIAE R+PQDG+  
Sbjct: 203 SDLHFEPYEKRYRIRFRIDGILHEVSEPPISLAGRLSARLKVMSKLDIAERRVPQDGRIK 262

Query: 158 VELAGN-AVSFRIATLPCRGGEKMVLRLLQQVSQALDVNTLGMQPLQLAGFAHALQQPQG 216
           ++L+   ++ FR++TLP   GEK+V+R+L   S  L +  LG +P Q   +   L +PQG
Sbjct: 263 MKLSRTKSIDFRVSTLPTLWGEKIVMRILDSSSAQLGIEKLGYEPDQEKLYLEMLAKPQG 322

Query: 217 LVLVTGPTGSGKTVTLYSALQKLNTADINICSVEDPVEIPIAGLNQTQIHPRAGLTFQGV 276
           ++LVTGPTGSGKTV+LY+ L  LNTA+ NI + EDPVEI + G+NQ  I+ +AGLTF   
Sbjct: 323 MILVTGPTGSGKTVSLYTGLNILNTAERNISTAEDPVEINLEGVNQVHINLKAGLTFASA 382

Query: 277 LRALLRQDPDVIMIGEIRDGETAEIAIKAAQTGHLVLSTLHTNSTCETLVRLQQMGVARW 336
           LR+ LRQDPDV+M+GEIRD ETAEIAIKAAQTGHLVLSTLHTNS  ETL RL  MGV  +
Sbjct: 383 LRSFLRQDPDVVMVGEIRDLETAEIAIKAAQTGHLVLSTLHTNSAAETLTRLINMGVPGY 442

Query: 337 MLSSALTLVIAQRLVRKLCPHCRRQQGEPIH------IPVNVWPSPLPHWQAPGCVHCYH 390
            ++S++ L+IAQRL R+LC  C++ +  P H                  ++  GC HC  
Sbjct: 443 NIASSVNLIIAQRLARRLCTECKQAEQIPEHELQRLGFTDEQIAQGFTTFKPVGCEHCSG 502

Query: 391 GFYGRTALFEVLPITPVIRQLISANTDVESLETHARQAGMRTLFENGCLAVEQGLTTFEE 450
           G+ GR  ++EV+ ++  I + I    +   +   A+  GMR L ++G L V QG+T+  E
Sbjct: 503 GYKGRVGIYEVMKMSDEIARTIMEGGNSLQIADQAKAQGMRDLRQSGLLKVLQGVTSIAE 562

Query: 451 LIRV 454
           + RV
Sbjct: 563 INRV 566