Pairwise Alignments

Query, 183 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Escherichia coli ECRC98

Subject, 184 a.a., N-acetyl-anhydromuranmyl-L-alanine amidase (RefSeq) from Shewanella loihica PV-4

 Score =  218 bits (555), Expect = 5e-62
 Identities = 106/176 (60%), Positives = 129/176 (73%), Gaps = 2/176 (1%)

Query: 1   MLLEQGWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFGGPWIDALFTGTIDPQA 60
           M L +GW+   R+  SPH++ RPDDE  +LLV+HNISLP G+FG P+ID LF G +D QA
Sbjct: 4   MTLHKGWIRECRQCVSPHFNARPDDEV-SLLVIHNISLPAGQFGLPYIDQLFQGCLDIQA 62

Query: 61  HPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQYQGRERCNDFSIGIELEGT 120
              F ++  L VSAH LIRRDGE+VQYV  D RAWHAGVS + GR  CNDF+IGIELEGT
Sbjct: 63  DESFCDLQGLEVSAHFLIRRDGELVQYVSCDDRAWHAGVSSFAGRTGCNDFAIGIELEGT 122

Query: 121 DTLAYTDAQYQQLAAVTRALIDCYPDIANNM-TGHCDIAPDRKTDPGPAFDWARFR 175
           D+LAYTD QY++L  +T  L D YP +  N+  GH DIAP RKTDPG +FDW R+R
Sbjct: 123 DSLAYTDEQYERLTQLTLVLFDAYPMLNRNLIVGHSDIAPGRKTDPGESFDWHRYR 178