Pairwise Alignments

Query, 183 a.a., 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD from Escherichia coli ECRC98

Subject, 212 a.a., N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 83.2 bits (204), Expect = 3e-21
 Identities = 49/146 (33%), Positives = 71/146 (48%), Gaps = 17/146 (11%)

Query: 28  PTLLVVHNISLPPGEFGGPWIDALFTGTIDPQAHPFFAEIAHLRVSAHCLIRRDGEIVQY 87
           P L+V+H  ++   +    W+ A       P+A          +VSAH +I RDG +++ 
Sbjct: 2   PRLVVLHYTAMADAQGAADWLCA-------PRA----------QVSAHYVIGRDGAVMRL 44

Query: 88  VPFDKRAWHAGVSQYQGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTRALIDCYPDI 147
           VP   RAWHAG   + G    N  SIGIEL+   T  ++      L  +   ++  +   
Sbjct: 45  VPEHLRAWHAGAGAWGGCTDVNSASIGIELDNDGTSPFSAPLMDALEGLLGDILTRHGIP 104

Query: 148 ANNMTGHCDIAPDRKTDPGPAFDWAR 173
              + GH D+AP RK DPGP FDW R
Sbjct: 105 RKGVIGHSDLAPGRKIDPGPRFDWRR 130