Pairwise Alignments

Query, 385 a.a., DNA-binding transcriptional regulator CdaR from Escherichia coli ECRC98

Subject, 387 a.a., transcriptional regulator, CdaR (RefSeq) from Shewanella loihica PV-4

 Score =  323 bits (827), Expect = 7e-93
 Identities = 172/375 (45%), Positives = 245/375 (65%), Gaps = 2/375 (0%)

Query: 4   WHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALLVLSQGRVVDI 63
           + LD ++AQ IV RTM II  NINVM+++G I+GSG+  RIG  HEGALL +SQ R V++
Sbjct: 2   YFLDNQLAQQIVDRTMAIIGHNINVMNSQGVILGSGEPHRIGSTHEGALLAISQNRTVEL 61

Query: 64  DDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVCMTAEMMLEQSRLMH 123
           + A A  L GV+ GINLPL  +GEI+GVIG+TGEPE+L+ +GEL+ MTAEM++EQ+  + 
Sbjct: 62  NSASAASLQGVKPGINLPLHYQGEIIGVIGITGEPEHLKAFGELLKMTAEMIVEQANSLD 121

Query: 124 LLAQDSRLREELVMNLIQAE-ENTPALTEWAQRLGIDLNQPRVVAIVEVDSGQLGVDSAM 182
           +    +R +EE ++ LI+ E  +   L  WAQRL IDL  PRV A++ + S   G + A 
Sbjct: 122 VAQWRARQQEEFILQLIKPEGRDLNHLKIWAQRLDIDLEMPRVAAVLRI-SDDAGDELAN 180

Query: 183 AELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNSFGRWDVEDHRKRVEQLITRMKEYG 242
           ++L+ + + L TP R NL+A+ S+TE+V+LKPA      W  E    R+++L+ R+    
Sbjct: 181 SQLKTVLHLLETPSRGNLIAMTSMTELVILKPAFLDGKAWSAEAESLRIDRLLKRLPSEL 240

Query: 243 QLRFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPESRCYFYQDLMLPVLLDSLRGDW 302
             R ++SLG+YF     I RSY+TA  T+  G+Q  PE   Y Y+D  L V+L  L+ DW
Sbjct: 241 NARLKISLGHYFPATMDINRSYQTALETLNFGQQLHPEQSKYLYEDHALLVMLSGLKHDW 300

Query: 303 QANELARPLARLKAMDNNGLLRRTLAAWFRHNVQPLATSKALFIHRNTLEYRLNRISELT 362
           +  +L RP  RL   D N LLR+TLA++  H     A +KALFIHRNTL YRL++I+++T
Sbjct: 301 RGEQLLRPFQRLIDRDKNALLRKTLASYLGHFGDQQACAKALFIHRNTLRYRLDKIAQIT 360

Query: 363 GLDLGNFDDRLLLYV 377
            +D+   D  L LY+
Sbjct: 361 KVDIQKLDGLLQLYL 375