Pairwise Alignments

Query, 426 a.a., Type VI secretion system protein Fha from Escherichia coli ECRC98

Subject, 495 a.a., type VI secretion system-associated FHA domain protein TagH from Vibrio cholerae E7946 ATCC 55056

 Score =  177 bits (449), Expect = 6e-49
 Identities = 94/195 (48%), Positives = 128/195 (65%), Gaps = 5/195 (2%)

Query: 234 HLAVTPLLRGLGGSLTVSNSDDADDFL-EEAGRTLQAAIKGLLDLQQQ----RNSLSDKH 288
           HL   P+L GLG  L+  N  +    L +E G +LQA ++GLLDL QQ    R    +++
Sbjct: 300 HLVTGPILEGLGVDLSDENDMNRMHLLSQELGESLQACVRGLLDLHQQVSESRFGTLNRN 359

Query: 289 LRPLEDNPLRLNMDYATALDVMFAEGKSPVHLAAPAAVSESLRNVRHHEEANRAAIVESL 348
           L+P+EDNPLRL + Y   +  ++   KS VHL+APAA++ESL+ VR H EA + A  E+L
Sbjct: 360 LQPIEDNPLRLGLSYEETIRTLYDADKSVVHLSAPAAIAESLKTVRDHNEAMQFATSEAL 419

Query: 349 RVLLDAFSPQNLLRRFVQYRRSHELRQPLDDAGAWQMYSHYYEELASDRQQGFEMLFNEV 408
             +L+AFSPQ +LRRF  Y+R+ +  Q   DA AW MY  YY+EL S+RQ+GFE LF E+
Sbjct: 420 SQILNAFSPQVMLRRFHHYKRNSDTTQTSTDAWAWNMYCSYYQELTSNRQRGFEKLFWEI 479

Query: 409 YAQVYDRVLREKQRE 423
           + Q YDR +REKQ E
Sbjct: 480 FEQAYDRKIREKQLE 494



 Score = 63.9 bits (154), Expect = 1e-14
 Identities = 56/199 (28%), Positives = 90/199 (45%), Gaps = 30/199 (15%)

Query: 6   LQTLSLQVINGSELESGRAARCLFTQQGNV-GHAPECHWSVQDRQQSIPAQAFTVILHDG 64
           L +L+L V N   LESG +A+  +T  G V G +P   W + D Q S+      V++ DG
Sbjct: 6   LPSLTLLVTNAQHLESGLSAQHTWTSSGGVIGSSPNAQWRLVDAQGSVKPMHCEVMMVDG 65

Query: 65  TFCLRPQTAQLWLNQAKV-TATSDLIQLRQGDEIQIGRLMVRVHLNRGDIPHYDEEMATP 123
            +CL+      ++N A +      + +L   DE+ +G   +RV    G+    +E+  + 
Sbjct: 66  AYCLKDSCGSTYVNGADMPLGVGQMARLTHKDEVSVGPYRLRVLF--GNAIEVEEQYGSL 123

Query: 124 ETIVTNR--DMLTDTLLSTEGAPHYPGMTHRHQLADTVVNGFSADPLQALQSESLITTGD 181
           + +  ++  D+L D  L  E          +H+L        + DPLQAL         D
Sbjct: 124 DALFASKDEDLLADLTLDIE--------PEKHELPT------NTDPLQAL---------D 160

Query: 182 PLSGIAAVRPSAPLSDPAS 200
            L G AA   ++ L DP S
Sbjct: 161 NLMG-AAGSSTSLLDDPKS 178