Pairwise Alignments

Query, 590 a.a., SmdA family multidrug ABC transporter permease/ATP-binding protein from Escherichia coli ECRC98

Subject, 604 a.a., lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA (RefSeq) from Shewanella loihica PV-4

 Score =  255 bits (652), Expect = 3e-72
 Identities = 165/520 (31%), Positives = 278/520 (53%), Gaps = 11/520 (2%)

Query: 60  IATMVLIAVVVYLLRYVWRVL-LFGASY---QLAVELREDYYRQLSRQHPEFYLRHRTGD 115
           + T   + + ++ LR +   L  +G SY   ++ +++R+  +    R    +     +G+
Sbjct: 85  LKTAPFVVIGLFTLRGLANFLSTYGISYISARMIMDMRQQVFEHYLRLPVSYIDAESSGN 144

Query: 116 LMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIMMSTQI--SWQLTLFALLPMPVMAI 173
           L++R T D +++  A+G  ++T+V     G  V+ M+      SW+L+L  L+  P++ +
Sbjct: 145 LISRVTFDTEQIARASGSALITIVRD---GITVIGMLGVMFYNSWKLSLCILIVGPLIGL 201

Query: 174 MIKRNGDALHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKK 233
           +I        +  K  Q A   +   T++ +   + +  FG +  +S  FA   +D   +
Sbjct: 202 VIAVVSRKFRKVSKQIQTAMGGVTSVTEQMIKGHKNVLVFGGQQAESQRFAKVNDDNRSR 261

Query: 234 NMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVQGSLTLGQLTSFMMYLGLMIWPMLA 293
            M++A   A   P + +   +A    +   S   ++  LT G   + +  +  M+ P+ +
Sbjct: 262 TMKLALAQAISQPLVMVIGSLALAFVLYASSLESMRADLTAGTFATILAAMLAMLQPIKS 321

Query: 294 LAWMFNIVERGSAAYSRIRAMLAEAPVVNDGSEPVPEGRGELDVNIHQFTYPQTDHPALE 353
           L  +    +RG AA S I A+L     V++G+       G L  +   F Y   +  AL+
Sbjct: 322 LTRVNAEFQRGIAACSTIFAVLDTPAEVDNGTFETKRVEGRLSFDKVNFRYNNQEGLALK 381

Query: 354 NVNFALKPGQMLGICGPTGSGKSTLLSLIQRHF-DVSEGDIRFHDIPLTKLQLDSWRSRL 412
            V+F + PG+ L + G +GSGKST+ SLI R + D+  GDIR  D+ L   +L + R ++
Sbjct: 382 EVDFQVNPGETLALVGRSGSGKSTIASLITRFYSDLDSGDIRLDDVSLRDYKLAALRRQV 441

Query: 413 AVVSQTPFLFSDTVANNIALGCPN-ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGV 471
           A+VSQ   L +DT+A NIA   P   T+++I   A+LA+  + I  +P+G  T+VGE GV
Sbjct: 442 ALVSQQVTLINDTIAANIAYAYPGEVTEEQIIDAAKLANAWEFICNMPEGIYTQVGENGV 501

Query: 472 MLSGGQKQRISIARALLVNAEILILDDALSAVDGRTEHQILHNLRQWGQGRTVIISAHRL 531
           MLSGGQ+QRI+IARA+L +A ILILD+A SA+D  +E  I   L    Q RT I+ AHRL
Sbjct: 502 MLSGGQRQRIAIARAILRDAPILILDEATSALDTESEKAIQTGLDNLRQNRTSIVIAHRL 561

Query: 532 SALTEASEIIVMQHGHIAQRGNHDVLAQQSGWYRDMYRYQ 571
           S +  A++I+V+  G + +RG H  L  + G Y ++Y+ Q
Sbjct: 562 STVENANQILVVDQGKVVERGTHSELLAKQGIYYNLYQMQ 601