Pairwise Alignments

Query, 590 a.a., SmdA family multidrug ABC transporter permease/ATP-binding protein from Escherichia coli ECRC98

Subject, 601 a.a., ABC transporter, ATP-binding protein MsbA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  261 bits (668), Expect = 4e-74
 Identities = 167/519 (32%), Positives = 279/519 (53%), Gaps = 11/519 (2%)

Query: 63  MVLIAVVVYLLRYVWR-----VLLFGASY---QLAVELREDYYRQLSRQHPEFYLRHRTG 114
           ++L+A +V +L +  R     V  +G SY   +L +++R+  +         +  +  TG
Sbjct: 81  VLLMAPIVVILMFSLRGFANFVSTYGISYMSARLIMDMRQQVFEHYLSLPVSYMDKENTG 140

Query: 115 DLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIMMSTQISWQLTLFALLPMPVMAIM 174
           +L+++ T D +++  A+G  ++++V   V    +L +M    SW+L+L  L+  P+M ++
Sbjct: 141 NLISKVTFDTEQIARASGSALISIVRDSVTIIGMLGLMFYN-SWKLSLCILVIGPIMGVV 199

Query: 175 IKRNGDALHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKN 234
           I        +  K  Q A   ++  T++ +   + + AFG ++ ++A FA   +    +N
Sbjct: 200 ITIVSRRFRKVSKQIQTAMGDVSAATEQMIKGHKNVLAFGGQETETARFAKINDRNRHQN 259

Query: 235 MRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVQGSLTLGQLTSFMMYLGLMIWPMLAL 294
           M++A   A   P I +    A    +   S   ++  LT G   + +  +  M+ P+  L
Sbjct: 260 MKLAVAQAVSQPLIMVIGSFALAFVLYAASLDSMKADLTAGTFATILGAMMAMLQPIKNL 319

Query: 295 AWMFNIVERGSAAYSRIRAMLAEAPVVNDGSEPVPEGRGELDVNIHQFTYPQTDHPALEN 354
             +    +RG AA + +  +L   P  + G+  V   +G L  +   F+Y   +  ALE 
Sbjct: 320 TRVNAEFQRGIAACTTVFELLDTVPESDTGTYTVARAKGNLRFDNVSFSYEGQERRALEK 379

Query: 355 VNFALKPGQMLGICGPTGSGKSTLLSLIQRHFD-VSEGDIRFHDIPLTKLQLDSWRSRLA 413
           ++F +  GQ L + G +GSGKST+ SL+ R +  +  GDI   D+ +    L S RS++A
Sbjct: 380 IDFEVSQGQTLALVGRSGSGKSTIASLVTRFYTGLESGDILLDDVSIYDYSLKSLRSQVA 439

Query: 414 VVSQTPFLFSDTVANNIALGCPN-ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVM 472
           +VSQ   LF+DT+ANNIA   P   T+++I   A LA   + I +LP G DT+VGE GV+
Sbjct: 440 LVSQQVTLFNDTIANNIAYAYPGEVTREQIIEAATLAHAMEFIEQLPDGLDTQVGENGVL 499

Query: 473 LSGGQKQRISIARALLVNAEILILDDALSAVDGRTEHQILHNLRQWGQGRTVIISAHRLS 532
           LSGGQ+QRI+IARA+L +A +LILD+A SA+D  +E  I   L    Q RT ++ AHRLS
Sbjct: 500 LSGGQRQRIAIARAMLRDAPVLILDEATSALDTESEKAIQQGLDNLRQNRTSVVIAHRLS 559

Query: 533 ALTEASEIIVMQHGHIAQRGNHDVLAQQSGWYRDMYRYQ 571
            +  A +I+V+  G I +RG H  L +  G Y  +Y+ Q
Sbjct: 560 TIESADQILVVDQGRIVERGTHKSLLELGGMYAKLYQMQ 598