Pairwise Alignments

Query, 397 a.a., multidrug efflux RND transporter periplasmic adaptor subunit AcrA from Escherichia coli ECRC98

Subject, 380 a.a., RND family efflux transporter, MFP subunit from Pseudomonas stutzeri RCH2

 Score =  379 bits (974), Expect = e-110
 Identities = 206/384 (53%), Positives = 271/384 (70%), Gaps = 17/384 (4%)

Query: 11  AVVLMLSGSLALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRTSAYRIAEVRP 70
           A++ +L+ ++ L GC ++ A    QQ P VG+VT++ EP  +TTELPGRT AYRIAEVRP
Sbjct: 9   ALMSILAMAVFLAGCQEEAAPPA-QQKPKVGIVTLQAEPFAVTTELPGRTRAYRIAEVRP 67

Query: 71  QVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQ 130
           QV+GII KR F EGSD++AG  LYQID + Y+AT  SA+  +A +++ A+       RY 
Sbjct: 68  QVNGIIQKRLFTEGSDVKAGQQLYQIDASVYEATLKSAQASVASSKSLAD-------RYA 120

Query: 131 KLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVT 190
           +L+  Q +SKQ YD+A A + QA       +A +E ARI++ YTKV +PISGR+G+S VT
Sbjct: 121 ELVKDQAVSKQAYDEARAASLQA-------EAELERARIDVRYTKVLAPISGRVGRSAVT 173

Query: 191 EGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTL-KQENGKAKVSLITS 249
           EGALV NGQA  LAT+QQLDPIYVDVTQ + D L L+++LA G L K  +  AKV+L   
Sbjct: 174 EGALVSNGQAQELATIQQLDPIYVDVTQPARDLLALRRDLAEGRLQKSGDNAAKVTLKLE 233

Query: 250 DGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNPNAILVP 309
           DG  +  +G LEFS+VTVD  TGS+TLRA+FPNPD  LLPGMFV A+L  G+   AILVP
Sbjct: 234 DGSDYAHEGKLEFSEVTVDAGTGSVTLRAVFPNPDKDLLPGMFVHAQLVAGMKSEAILVP 293

Query: 310 QQGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRP 369
           QQGVTR  +GD T +VV A+ KVE RPI   +A+G++WLV EGL+ GDRV+  GLQ ++P
Sbjct: 294 QQGVTRNTKGDPTAMVVNAESKVEVRPIKTERAVGNRWLVGEGLQPGDRVITEGLQFIQP 353

Query: 370 GVQVKAQEVTADNNQQAASGAQPE 393
           GV+V+A   T  +N+     AQP+
Sbjct: 354 GVEVEAVPATNVDNRGGVP-AQPQ 376