Pairwise Alignments

Query, 397 a.a., multidrug efflux RND transporter periplasmic adaptor subunit AcrA from Escherichia coli ECRC98

Subject, 382 a.a., multidrug resistance protein, AcrA/AcrE family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  343 bits (879), Expect = 6e-99
 Identities = 187/374 (50%), Positives = 252/374 (67%), Gaps = 5/374 (1%)

Query: 15  MLSGSLALTGC---DDKQAQQG-GQQMPAVGVVTVKTEPLQITTELPGRTSAYRIAEVRP 70
           ++S +L +  C   +DK A  G G Q   VGV+ V+ +P  I  ELPGR+ A+  AEVRP
Sbjct: 10  VISVALWMAACSPQEDKAAHGGAGPQSMEVGVIKVEAKPQVIKIELPGRSKAFLEAEVRP 69

Query: 71  QVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQ 130
           QV+GII KR+F EG +++ G SLYQID ATY+A   SA  DLA+A A+   A+    RYQ
Sbjct: 70  QVNGIITKRSFVEGGNVKQGESLYQIDSATYKAALVSANADLARANASLASAKAKAARYQ 129

Query: 131 KLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVT 190
           +L+ T  ISKQ++D+A A  ++A A+VT A+AA+ TA+INL YT+V +PISGRIGKS+VT
Sbjct: 130 QLVKTNAISKQDFDEADAAYKEALASVTVAEAAINTAKINLEYTEVLAPISGRIGKSSVT 189

Query: 191 EGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQENGKAKVSLITSD 250
            GALV   Q+  LAT+QQLDPI VD+ QSS   LRLK +L  G L   +  A V L+  D
Sbjct: 190 AGALVTANQSQTLATIQQLDPINVDIAQSSAQLLRLKAKLKQGKLLAAD-NADVQLVLVD 248

Query: 251 GIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQ 310
           G  +   G L+F++V+VDQ TGS+ LRA FPNPD  LLPGM+VRA L  G +P AILVPQ
Sbjct: 249 GTVYGHTGKLQFAEVSVDQNTGSVILRAEFPNPDGVLLPGMYVRAMLNAGTDPQAILVPQ 308

Query: 311 QGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPG 370
           + +TR  +G+A  +VV A  +VE + +  ++ I  +W VT GL  GD+V++ GLQK+RPG
Sbjct: 309 KAITRNAKGEAVAMVVNAQGQVEAKIVTTAEVINHQWRVTSGLAVGDQVIVEGLQKIRPG 368

Query: 371 VQVKAQEVTADNNQ 384
             V  + ++A   Q
Sbjct: 369 APVIPKVISATQAQ 382