Pairwise Alignments

Query, 377 a.a., putative multidrug ABC transporter permease YbhS from Escherichia coli ECRC98

Subject, 373 a.a., ABC transporter, permease protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  158 bits (399), Expect = 3e-43
 Identities = 110/381 (28%), Positives = 199/381 (52%), Gaps = 22/381 (5%)

Query: 9   RRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFGYGINLDSSKLRVGILLEQRSEAAL 68
           RR+ A+ VKE RQ+ RD  ++ + V+IPL+ L +FGY IN D+  L  G++    S  + 
Sbjct: 3   RRIWAVVVKELRQLSRDRMTFGMIVMIPLVQLMLFGYAINTDARHLPAGLVNLSDSSYSR 62

Query: 69  DFTHTMTGSPYIDATIS-DNRQELIAKMQAGKIRGLVVIPVDFAEQMERANATA------ 121
                +  +  +D   S  +  +  A +  G+++ ++ +  D  E++ R  A A      
Sbjct: 63  ALVKAVEATQVVDFKRSYSSAAQAEAAITRGEVKAVLYLGADLDERLVRHPAFAGQAYFA 122

Query: 122 -PI-QVITDGSEPNTANFVQGYVEGIWQIWQMQRAEDNGQTFE---PLIDVQTRYWFNPA 176
            P+ Q + DGS+   A+ ++        + QM   E  G+T +   P  +V    +FNP 
Sbjct: 123 EPVGQWLVDGSDTVVASTIRS-------LRQMPLDEITGRTLKSNPPSFEVVQ--YFNPE 173

Query: 177 AISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLSTEITRTELLLCKLIPYYF 236
             S   I+PG + +I+T+   + TS  + RE E+G ME L++T +   EL+L K+ PY  
Sbjct: 174 QRSVVNIVPGLLGVILTMTMVMFTSAAIVREREQGNMEFLITTPVRPLELMLGKITPYVL 233

Query: 237 LGMLAMLLCMLVSVFILGVPYRGSLLILFFISSLFLLSTLGMGLLISTITRNQFNAAQVA 296
           +G + + + +     +  VP RG +  + F + LF+ ++L +GL+ISTI + Q  + Q+ 
Sbjct: 234 VGFVQVTIILSAGHLLFDVPIRGGIDSIAFAAMLFICASLTLGLVISTIAKTQLQSMQMT 293

Query: 297 LNAAFLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFVSTLQSLFLAGNIPVVLVVNVLF 356
           +    LPSI+LSGF+F  ++MP   + +   +PA +F+   +++ L       L  + L+
Sbjct: 294 V-FILLPSILLSGFMFPYEAMPVAAQWIAEALPATHFMRMSRAIVLRDAEVSDLQFDALW 352

Query: 357 LIASAVMFIGLTWLKTKRRLD 377
           +I    + + +  L+  +RLD
Sbjct: 353 MIGFTCLGLLVASLRFSKRLD 373