Pairwise Alignments

Query, 513 a.a., Na(+)/H(+) antiporter NhaB from Escherichia coli ECRC98

Subject, 531 a.a., sodium/proton antiporter (RefSeq) from Shewanella loihica PV-4

 Score =  685 bits (1767), Expect = 0.0
 Identities = 341/509 (66%), Positives = 414/509 (81%), Gaps = 5/509 (0%)

Query: 1   MEISWGRALWRNFLGQSPDWYKLALIIFLIVNPLIFLISPFVAGWLLVAEFIFTLAMALK 60
           M ++  +A   NFLG SP W+K+A++ FL++NP++F ++PFVAGWLLV EFIFTLAMALK
Sbjct: 1   MPVTMSQAFIDNFLGNSPKWFKIAILSFLVINPIVFYLNPFVAGWLLVVEFIFTLAMALK 60

Query: 61  CYPLLPGGLLAIEAVFIGMTSAEHVREEVAANLEVLLLLMFMVAGIYFMKQLLLFIFTRL 120
           CYPL PGGLLAIEAV IGMTS   V  E+ ANLEVLLLL+FMVAGIYFMKQLLLF+FT++
Sbjct: 61  CYPLQPGGLLAIEAVIIGMTSPSQVLHEIEANLEVLLLLIFMVAGIYFMKQLLLFVFTKM 120

Query: 121 LLSIRSKMLLSLSFCVAAAFLSAFLDALTVVAVVISVAVGFYGIYHRVASSR--TEDTDL 178
           +  IRSK+++SL FC+A+AFLSAFLDALTV+AV+I+VAVGFY IYH+VAS +  T+D D 
Sbjct: 121 ITKIRSKVVVSLMFCIASAFLSAFLDALTVIAVIIAVAVGFYSIYHKVASGKSFTDDHDH 180

Query: 179 QDDSHIDKHY--KVVLEQFRGFLRSLMMHAGVGTALGGVMTMVGEPQNLIIAKAAGWHFG 236
             DSH + H   +  LE FRGFLR+L+MHAG+GTALGGV TMVGEPQNLIIA  A W FG
Sbjct: 181 TSDSHGEGHSLCEDELEAFRGFLRNLLMHAGIGTALGGVCTMVGEPQNLIIAAQANWQFG 240

Query: 237 DFFLRMSPVTVPVLICGLLTCLLVEKLRWFGYGETLPEKVREVLQQFDDQSRHQRTRQDK 296
           +F LRM PVTVPV I G+ TC LVEK +WFGYG+ LPE V ++L  +       RT+ DK
Sbjct: 241 EFALRMGPVTVPVFISGIATCFLVEKFKWFGYGQQLPEAVHKILSDYASYEDAHRTKHDK 300

Query: 297 IRLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATSLTGVTDEHAIGKAFTESLPFTAL 356
           I+L++QA +GVWL+  LA HLA VGLIGLSVIIL T+  GVT+EHA+GKAF E+LPFTAL
Sbjct: 301 IKLVIQAFVGVWLIVGLAFHLASVGLIGLSVIILTTAFNGVTNEHALGKAFEEALPFTAL 360

Query: 357 LTVFFSVVAVIIDQQLFSPIIQFVLQASEHAQLSLFYIFNGLLSSISDNVFVGTIYINEA 416
           L VFF++V VIIDQQLF+P+IQ+ L    + QL +FYI NGLLS +SDNVFVGT+YINE 
Sbjct: 361 LAVFFAIVGVIIDQQLFAPVIQWALSYEGNTQLVIFYIANGLLSMVSDNVFVGTVYINEV 420

Query: 417 KAAMESGAITLKQYELLAVAINTGTNLPSVATPNGQAAFLFLLTSALAPLIRLSYGRMVW 476
           KAA+  G IT  Q++LLAVAINTGTNLPSVATPNGQAAFLFLLTSA+APLIRLSYGRMVW
Sbjct: 421 KAALLDGQITRDQFDLLAVAINTGTNLPSVATPNGQAAFLFLLTSAIAPLIRLSYGRMVW 480

Query: 477 MALPYTLVLTLVGLLCVEF-TLAPVTEWF 504
           MALPYT+VL++VG+L +E   L  +T++F
Sbjct: 481 MALPYTIVLSIVGILAIETGFLGEMTQYF 509