Pairwise Alignments

Query, 307 a.a., Uncharacterized HTH-type transcriptional regulator YdcI from Escherichia coli ECRC98

Subject, 300 a.a., LysR family transcriptional regulator from Pseudomonas fluorescens SBW25-INTG

 Score =  107 bits (268), Expect = 3e-28
 Identities = 85/296 (28%), Positives = 135/296 (45%), Gaps = 6/296 (2%)

Query: 13  LRHLHTFVAVAQQGTLGRAAETLNLSQPALSKTLNELEQLTGARLFERGRQGAQLTLPGE 72
           L  L  F AV  +G+   AAE + +SQPALS+ + +LE     +LFER  +   LT+ G 
Sbjct: 7   LNDLQAFRAVVDKGSFRGAAEAIRISQPALSRRIEKLETALDVKLFERTTRRVSLTMVGR 66

Query: 73  QFLTHAVRVLDAINTAGQSLHRKEGPNNDVVRVGALPTAALGILPSVIGQFHQQQKETTL 132
            FL    R+LD ++ A   +          V +  +P+ A   +P VI +FH+   +  L
Sbjct: 67  AFLPQVERMLDDLDVALMGISNVASTRMGNVTIACVPSTAYYFMPHVISEFHKLYPKIRL 126

Query: 133 QVATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYELLFLESLKLVVRPNHPLLQ-EN 191
           +V   S   +   +++GE D G+       L   + +ELL  E   L  R +HPL Q ++
Sbjct: 127 RVLDASAGEVCNAVESGEADFGVS--FSGSLADEVEFELLLQERYVLACRRDHPLAQRDS 184

Query: 192 VTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSGCIETLSASLSRQLTVEYDYVWF 251
           VT +   E+  +   + +  R   D  ++    K PS C ET   +    L      V  
Sbjct: 185 VTWTEAYEYDYITVDKTSGNRSLLDQALRGVRVKKPSIC-ETHHVTTMIGLVEAGLGVAM 243

Query: 252 VPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVDATFSSGCQLMINAIRKSMPF 307
           VPS A+   L H  LV++P+        +G++ R   T      L +  + + MPF
Sbjct: 244 VPSIAM-PALEHPILVSVPLVEPQVMRNVGLIKRRGRTLPPAA-LELERLVREMPF 297