Pairwise Alignments

Query, 298 a.a., D,D-dipeptide ABC transporter permease from Escherichia coli ECRC62

Subject, 310 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

 Score =  260 bits (665), Expect = 2e-74
 Identities = 128/291 (43%), Positives = 190/291 (65%), Gaps = 2/291 (0%)

Query: 2   MLSEETSAVRPQKQTRFNGAKLVWMLKGSPLTVTGAVIIVLMLLMMIFSPWLATHDPNAI 61
           +LS+  ++    +  RF    LV++   +PL V G  I + ++++  F+PW+A HDP   
Sbjct: 20  LLSDSPASRLQARLGRFYSGWLVFIR--NPLAVIGLAIFLCLVILATFAPWIAPHDPLFG 77

Query: 62  DLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVL 121
            L+ RLLPPSA HW GTD+ GRD++SR++ GS+ +++   +V   A  +G L+G  +G +
Sbjct: 78  TLSERLLPPSAGHWLGTDQQGRDIWSRIVFGSRTTLMIIFLVAITAAPVGLLIGTTAGFV 137

Query: 122 GGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALV 181
           GG  +A +MR+ D  L+ P L+L +A AAALG  L NA+LAIA+   P Y R+AR + L 
Sbjct: 138 GGIVEAALMRLTDAFLAFPKLILALAFAAALGAGLENAVLAIALTAWPPYARIARAETLA 197

Query: 182 VRQYTYVQAAKTFGASRWHLINWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQ 241
           VR+  +V AA+  G+S   ++   I+   +P L+V+ SLD+   IL+AA LGF+GLG   
Sbjct: 198 VRRTDFVAAARMCGSSPLRILIGQIMPMCIPSLVVRVSLDMAGVILIAAGLGFLGLGVAP 257

Query: 242 PSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNLFGDGIRDLLDPK 292
           P  EWGAMV+ GR+ +L QWW C +PG AI + ++GFNL GDG+RD+LDPK
Sbjct: 258 PQPEWGAMVSEGRSQILAQWWVCTYPGIAICIVSLGFNLLGDGLRDVLDPK 308