Pairwise Alignments

Query, 340 a.a., autoinducer 2 ABC transporter substrate-binding protein LsrB from Escherichia coli ECRC62

Subject, 319 a.a., LacI family transcriptional regulator from Pseudomonas fluorescens FW300-N2C3

 Score = 72.4 bits (176), Expect = 1e-17
 Identities = 77/311 (24%), Positives = 135/311 (43%), Gaps = 20/311 (6%)

Query: 5   RFKKIALLSALGIAA--ISMNVQAAER--IAFIPKLVGVGFFTSGGNGAQQAGKELSVD- 59
           R   +A+L+A   A    S   Q AE+  +A + K +   FF +  +GA+   KE S D 
Sbjct: 8   RLLAVAMLAAASAALPISSAFAQTAEKPKVALVMKSLANEFFLTMEDGAKAYQKEHSADF 67

Query: 60  --VTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVRVLTWDS 117
             ++     E   + Q++++   +    +A+I++      + P +K+A+  G+ V+  D+
Sbjct: 68  DLISNGIKDETDTANQIRIVEQMIVSKVDALIIAPADSKAMVPVIKKAVDAGITVINIDN 127

Query: 118 DTKPE-CRSYYIN---QGTPAQLGGMLVDMAARQVNKDKAKVAFFYSSPTVTDQNQWVKE 173
              P   +S  IN    G   + G  LV     +  K   +V       T T  N   + 
Sbjct: 128 QLDPAVVKSKNINVPFVGPDNRKGARLVGEYLAKQLKAGDEVGIIEGVSTTT--NAQART 185

Query: 174 AKAKIAKEHPGWEIVTTQFGYNDATKSLQTAEGILKAYSDLDAIIA-PDANALPAAAQAA 232
           A  K A E    ++V+ Q G  +  K  Q A  +L  Y ++ A++A  D+ A+ A +   
Sbjct: 186 AGFKDAMEAAQVKVVSLQSGDWEINKGNQVAASMLSEYPNIKALLAGNDSMAVGAVSAVR 245

Query: 233 ENLKNDKVAIVGFSTPNVMRPYVERGTVKEFGLWDVVQQGKISVYVADALLKKGSMKTGD 292
              K  KV +VG+   N ++P ++ G V         +Q    +  A  +LK      G+
Sbjct: 246 AAGKAGKVQVVGYDNINAIKPMLKDGRVLATADQFAAKQAVFGIETALKMLK------GE 299

Query: 293 KLDIQGVGQVE 303
           K+D    G +E
Sbjct: 300 KVDSGTNGVIE 310