Pairwise Alignments

Query, 340 a.a., autoinducer 2 ABC transporter substrate-binding protein LsrB from Escherichia coli ECRC62

Subject, 349 a.a., Periplasmic binding protein/LacI transcriptional regulator (NCBI) from Rhodospirillum rubrum S1H

 Score = 88.2 bits (217), Expect = 3e-22
 Identities = 81/315 (25%), Positives = 129/315 (40%), Gaps = 15/315 (4%)

Query: 30  IAFIPKLVGVGFFTSGGNGAQQAGKELSVDVTYDGPTEPSVSGQVQLINNFVNQGYNAII 89
           IA + K+ G+ +F     GA+Q G +   D    GP++   + QVQL+ N + QG +AI 
Sbjct: 46  IATVVKVDGIAWFDRMREGAKQFGADTGHDTWMVGPSQADAAAQVQLVENLIAQGVDAIC 105

Query: 90  VSAVSPDGLCPALKRAMQRGVRVLTWDSDTKPECRSYYINQGTPAQLGGMLVDMAARQVN 149
           V   S + L P LK+A  RG+ V+  ++        + +        G  L+++    + 
Sbjct: 106 VVPFSVEALEPVLKKARDRGIVVIAHEASNITNA-DFVLEAFDNLAYGAKLMEVLGTYM- 163

Query: 150 KDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQF-GYNDATKSLQTAEGIL 208
           K + K      S T   QN+W+  A A      P  E  T +   Y+DA       + +L
Sbjct: 164 KGEGKYVTTVGSLTSKSQNEWIDGAIAYQKAHFPKMEQATGRLETYDDANTDYNKLKEVL 223

Query: 209 KAYSDLDAII-APDANALPAAAQAAENLKNDKVAIVGFSTPNVMRPYVERGTVKEFGLWD 267
             Y D+  I+  P   +  A    +E    DK+   G    +V   Y+ +G ++    WD
Sbjct: 224 TTYPDIKGILGGPMPTSAGAGRLISERGLKDKLFFAGTGLVSVAGEYLSKGDIQYIQFWD 283

Query: 268 VVQQGKISVYVADALL--KKGSMKTGDKLDIQGVGQVEVSPNSVQGYDYEADGNGIVLLP 325
                     VA   L  K   +K G  L + G   +      V G D    G G V + 
Sbjct: 284 PAVAAYAMNIVAVMALDGKADQIKAGLNLGLPGYTSLTA---PVAGKDKLLYGAGWVGV- 339

Query: 326 ERVIFNKENIGKYDF 340
                 K+N+  Y+F
Sbjct: 340 -----TKDNMEDYNF 349