Pairwise Alignments

Query, 134 a.a., DNA-binding protein StpA from Escherichia coli ECRC62

Subject, 137 a.a., DNA-binding protein H-NS from Vibrio cholerae E7946 ATCC 55056

 Score =  123 bits (308), Expect = 1e-33
 Identities = 66/135 (48%), Positives = 89/135 (65%), Gaps = 1/135 (0%)

Query: 1   MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKIST 60
           MS + ++L NIR+LRA ARE +I+ LEE L+K   V +ER+E E ++    AE++ K++ 
Sbjct: 3   MSEITKTLLNIRSLRAYARELTIEQLEEALDKLTTVVQERKEAEAEEIAARAEQEAKLAA 62

Query: 61  WLELMKADGINPEELLGNSSAAAPRAGK-KRQPRPAKYKFTDVNGETKTWTGQGRTPKPI 119
             E +  DGI+ E L+   S       K KR PRPAKYK+ D NGE KTWTGQGRTP  I
Sbjct: 63  IAEQIAKDGIDLEALISALSGETKTKAKGKRAPRPAKYKYIDTNGEEKTWTGQGRTPSVI 122

Query: 120 AQALAEGKSLDDFLI 134
            +AL EGKSL++F +
Sbjct: 123 QKALDEGKSLEEFAL 137