Pairwise Alignments

Query, 379 a.a., murein hydrolase activator NlpD from Escherichia coli ECRC62

Subject, 310 a.a., peptidase M23B (RefSeq) from Shewanella loihica PV-4

 Score =  218 bits (555), Expect = 2e-61
 Identities = 118/267 (44%), Positives = 157/267 (58%), Gaps = 13/267 (4%)

Query: 115 KGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPIT 174
           KG  +   Y VK+GDTL+ IAW    DF ++A+ N ++ PY +  GQ L++ + +    +
Sbjct: 53  KGGLTSDHYKVKRGDTLYSIAWAANKDFAEIARYNGLRKPYTIYPGQVLKLKSTNAVTNS 112

Query: 175 GGNAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQS---ANKMLPNNKPAATT 231
                TQ  +       K  Q +T     + T+  S+ +       A K L     +A  
Sbjct: 113 KTQRSTQVSS-------KKTQQNTAKNQPKQTVNSSQQAAASKTALAKKSLDRGDKSAYA 165

Query: 232 VTAPVTVPTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQA 291
           VT           +P   S++    +  W WP +GK+I TF   E GNKGI IAGS+G  
Sbjct: 166 VTTGQQNVNGVIHKP---SSTLPKKVQRWHWPVKGKLIGTFSTKEQGNKGIKIAGSRGDR 222

Query: 292 IIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMGS 351
           I A ADGRVVYAGNALRGYGNL+IIKH+DDYLSAYAH D +LV+E+Q V AGQ +A MG 
Sbjct: 223 IQAAADGRVVYAGNALRGYGNLVIIKHSDDYLSAYAHADKILVKEKQFVTAGQTVAKMGQ 282

Query: 352 TGTSSTRLHFEIRYKGKSVNPLRYLPQ 378
           TGT+   LHFEIRY GKSV+PL++LP+
Sbjct: 283 TGTNRVMLHFEIRYHGKSVDPLKFLPK 309