Pairwise Alignments

Query, 1122 a.a., exodeoxyribonuclease V subunit gamma from Escherichia coli ECRC62

Subject, 1192 a.a., exodeoxyribonuclease V, gamma subunit (RefSeq) from Shewanella loihica PV-4

 Score =  663 bits (1711), Expect = 0.0
 Identities = 417/1180 (35%), Positives = 635/1180 (53%), Gaps = 115/1180 (9%)

Query: 1    MLRVYHSNRLDVLEALMEFIVERERL-DDPFEPEMILVQSTGMAQWLQMTLSQKFGIAAN 59
            ML +  SNR++ L  L+   ++       P   E ILVQS GM+ WL++ ++++  +AA 
Sbjct: 1    MLYLVQSNRMEALAELLANELQTPLPGQSPLSNEQILVQSPGMSTWLRLAIAKQNQVAAA 60

Query: 60   IDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQLLEREDFTLLRHYLTDDS 119
            ++FPLP+SFIW +  ++LP++PKE+AF K +M+WKLM LLP LL +E F  L +YL DD+
Sbjct: 61   LEFPLPSSFIWQLCHQLLPDVPKENAFTKPAMTWKLMELLPGLLSQEVFAPLANYLKDDA 120

Query: 120  --------DKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGH-----LVEGLGEAQAWQA 166
                       KLFQL S+ AD+FDQYLVYRPDW+  WE G          L   Q WQ+
Sbjct: 121  ILTDSAAPHSLKLFQLCSQIADIFDQYLVYRPDWILAWEQGEDRLPPKERPLDANQQWQS 180

Query: 167  PLWKALVEYTHQ-LGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISALPPVYLQ 225
             LW+ L+ Y H  L Q R+HRANL+Q   + L         LP R+F+ GIS++ P  L+
Sbjct: 181  LLWRELIHYNHHTLNQSRYHRANLHQALFDALSDPLCDLSKLPPRLFVFGISSMAPQTLE 240

Query: 226  ALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPLFRDSENAGQ 285
             L  L K I++ +L  +PC++YWGDI DP    KL  R      + ++L +  +S+    
Sbjct: 241  VLYFLAKRIDVVMLNLSPCQHYWGDIVDP----KLRARMALQYGDKQQLAIDWESK---- 292

Query: 286  LFNSDGEQDVGNPLLASWGKLGRDYIYLLSDL---ESSQELDAFVDVTPDNLLHNIQSDI 342
                    +VGNPLLA+ GK+GR+ + L+ +L   +++   + + D   ++LLH +Q DI
Sbjct: 293  -------LEVGNPLLANNGKMGRELLDLILELPENDTNFNFECYQDPGSNSLLHGVQQDI 345

Query: 343  LELENRA-VAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDRLLAMLEEDP 401
            LEL  R    G + E +  +  +R L   D S+T   CHSP RE+E LHD LL  L +  
Sbjct: 346  LELCTRGETLGPDAELYLTTKGRRVLKIDDDSLTLRSCHSPLRELETLHDHLLEQLSQSD 405

Query: 402  TLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPVLEAFISLLSLP 461
             L P+DI+VM+ D+ +Y+P+I AVF S   D ++PYAI+DR A Q  P++ +F+ LL L 
Sbjct: 406  GLAPKDIVVMMPDVAAYAPYIDAVFASKRGDHFIPYAIADRGAAQESPLINSFLHLLGLN 465

Query: 462  DSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDDDNVRELELPATGQ 521
             SRF   D+L +L+VP +  RFD+ ++ L  +R+W+ ++G+RWG D  + +  +LPA   
Sbjct: 466  KSRFALTDILGILEVPAVMRRFDLDDDDLLLIRRWLEQAGVRWGRDQHSRQAQQLPAFEH 525

Query: 522  HTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLASLLMQLNIWRRGLAQE 581
            ++W FG+ R++LGY+       +   L      G  A+ +G L + +  ++ +   L + 
Sbjct: 526  NSWAFGIKRLILGYSFSDEAPIYHDSLALPGVEGQSAQALGKLLNFIEAIDEFNLALGEH 585

Query: 582  RPLEEWLPVCRDMLNAFF-LPDAETEAAMTLIEQQWQAIIAEGLGAQYGDAVPLSLLRDE 640
             PL   +   + ++  F+   D E      L+ Q    +  E    QY   + L ++++ 
Sbjct: 586  CPLSVRITQLQTLVETFYDCVDEELSQKQELL-QAITRLSEELTATQYQSELELEVMQNW 644

Query: 641  LAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMNDGVYPRQLAPLGFDLMSQK 700
              + L + R+ QR+LAG VN CTLMPMRSIPF +VCLLGMNDGVYPR   P+GFDL++Q+
Sbjct: 645  FTRHLTESRVGQRYLAGSVNFCTLMPMRSIPFMLVCLLGMNDGVYPRVQHPVGFDLVAQE 704

Query: 701  -PKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNSERFPSVLVQELIDYIGQSH 759
             P++GDRSRR DDRYLFLEAL+SA+++LYISYIG S +DNSER PS+LV ELI+Y  Q  
Sbjct: 705  GPRKGDRSRRLDDRYLFLEALLSAREQLYISYIGHSERDNSERIPSMLVSELIEYC-QLC 763

Query: 760  YLPGD-----EALNCDES--------EARVKAHLTCLHTRMPFDPQNYQPGE-------- 798
            YLP +     +  N D++        E  +   L       PFD + Y   E        
Sbjct: 764  YLPENCAHLLKGSNADDTSTADIAKIELAILDQLIITMPLQPFDERLYLADESEGAECEG 823

Query: 799  --------RQSYAREWLP-AASQAGKAH-----------SEFVQ-PLPFTLP----ETVP 833
                    RQSY+ +W P A ++  K H             F++ PL         E + 
Sbjct: 824  AKSEPRRLRQSYSEQWCPRALTEQDKQHDGEQGAKPASAGHFIEAPLSLVADEDKGEPLE 883

Query: 834  LETLQRFWAHPVRAFFQMRLQVNFRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDD 893
            L  L RF+ +P + FF   L+++         + EPF L  LSRYQ+   L+   V+  D
Sbjct: 884  LSALIRFYRNPAQYFFNRTLKLDLNLSIQADENDEPFALNPLSRYQLQSTLIEDAVKSGD 943

Query: 894  ---AERLFRRFRAAGDLPYGAFGEIFWETQCQEMQQLADRVIACR-QPGQSMEIDLACN- 948
               +  L  R R +G LP   F ++  +    +++ L  R +  + +   + +IDL  + 
Sbjct: 944  ERPSSELLERLRLSGQLPLAPFDDLLLKQYQHDIRALVGRTLYLQGESSHTQDIDLLLSD 1003

Query: 949  --GVQITGWLPQVQPDGLLRWRPSLLSVAQGMQLWLEHLVYCASGGNG-----------E 995
                 + G +  V   GL+ +RP   +    ++++L HL   AS  +            +
Sbjct: 1004 SAATALVGRIDGVSAKGLVNYRPGTANARDLIRVYLRHLCLNASVSDNSDVERHEATPWQ 1063

Query: 996  SRLFLRKDGEWR-FPPLAAEQALHYLSQLIKGYREGMSAPLLVLPESGGAWLKTCYDAQN 1054
               +L   G +  F P+  EQAL+ LS   + Y +G S PL  +P +  A++        
Sbjct: 1064 RHSYLLDIGHFHAFAPITPEQALNQLSLWAEHYHQGQSQPLPFMPRTAFAYV-------- 1115

Query: 1055 DAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDIWYQRLW 1094
            +A  +    L  A+ ++L   + N+   GEG +  YQRL+
Sbjct: 1116 EAEGEHIEKLIAAQPQWLDE-QSNL---GEGQEAHYQRLF 1151