Pairwise Alignments

Query, 407 a.a., integrase from Escherichia coli ECRC62

Subject, 419 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  162 bits (411), Expect = 1e-44
 Identities = 130/425 (30%), Positives = 209/425 (49%), Gaps = 33/425 (7%)

Query: 7   LSDKKLKALLGSEREAPIMIADGEGLSVKVSKQGNVSWVFSYRLGGRGSKLERLTLGRYP 66
           LSD  LKA L    + P   AD +GLSV+VS +G +++   YR     S   R+ +G YP
Sbjct: 3   LSDSWLKANLNKVADKPYEKADRDGLSVRVSAKGAITFQMRYRWA---SNAARVDIGPYP 59

Query: 67  DMPLKLAREKREQCRQWLAGGLDPKTEIELSTEETLKPVTVKDALEYWLVNYARRKRSD- 125
            + LK ARE+ E  R+ L    DP+   E   ++  K V+ + ++E     + + + SD 
Sbjct: 60  LLSLKEAREQCEAYRKLLLDNQDPR---EYKRDKAAKAVSNEGSVEQVFRAWHKSQFSDG 116

Query: 126 -----EALVRAQLRK---HIYPRLGRYPITRCETRHWVACFDEINQTKPMTAGRMFQISK 177
                ++     LR    +++P LG+  + +     W+  F+ I   KP        +S+
Sbjct: 117 RASVKDSTAHEYLRALEINVFPVLGKKQVDQVTLHQWLDLFESIAAKKPTITNLTLTVSR 176

Query: 178 QALRFCKVRRYAASDALAFL-TIQDVGQPSGQRDRVLSDSELADVWRCTDSDDQQPYYSR 236
           +AL++   RR  +++ L  + + +D+      R R LSD EL  + +  D+  +Q   +R
Sbjct: 177 RALKWAVRRRIISTNELMGIESKEDLNISRKSRKRTLSDDELKIILQAIDNAKRQRLGNR 236

Query: 237 LLKMLVLF-GARTMEVRLSRWSEWDFTSWIWTVPKEHSKTREK----IVRSIPEAIRPWL 291
           ++  + LF G R  E+RL++ + +DFT  IWTVP E+ KT  K    ++R I + I P L
Sbjct: 237 IMVFMALFFGCRIGELRLAQKAHFDFTKMIWTVPVENHKTGYKMQRPLLRPIIDEIVPLL 296

Query: 292 E--------ELKRETGKTGLLLGEDRTRQAVSLKGRRLFKDFHHNEPWTLHDLRRTFSTG 343
           E        EL   T K G+      TR +  +           NE W LHDLRRT  T 
Sbjct: 297 ELAFSLSPNELVFPTEKGGIYSQAATTRMSNPINTWAKLNGTPLNE-WYLHDLRRTQRTN 355

Query: 344 LNNMGIAPHIVELLLGHALPGVMAIYNRSLYLPEKLDALNKWYDRLELL--AGNHSNIVI 401
           ++ +     + E +LGH L G+ +IY+   YL E+  A   W+ +L+ L     + N+V 
Sbjct: 356 MSKI-TTTEVAETMLGHKLSGIQSIYDHYDYLEEQAKAYRIWWQKLQRLKDPAAYHNVVE 414

Query: 402 LKAGE 406
           LKA +
Sbjct: 415 LKAAQ 419