Pairwise Alignments

Query, 407 a.a., integrase from Escherichia coli ECRC62

Subject, 429 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  307 bits (787), Expect = 3e-88
 Identities = 164/424 (38%), Positives = 250/424 (58%), Gaps = 21/424 (4%)

Query: 1   MAGTNKLSDKKLKALLGSEREAPIMIADGEGLSVKVS-----KQGNVSWVFSYRLGGRGS 55
           MA    +++  L +L     + P  ++D  GL+ + +     K  NV W+F YR+GGR +
Sbjct: 1   MATKKNMTNTALVSLTNKPLDKPTTLSDSGGLAARATPAKDGKGNNVLWIFRYRMGGRET 60

Query: 56  KLERLTLGRYPDMPLKLAREKREQCRQWLAGGLDPKTEIELSTEETLKPVTVKDALEYWL 115
               +  G+YPD+ L  AREKRE+C+ W+A G DPKT++EL   + +KP+TV + L+ W+
Sbjct: 61  PQRTIVFGKYPDLKLAGAREKRERCKVWIADGKDPKTQLELELSKAVKPLTVAEVLDNWI 120

Query: 116 VNYARRKRSDEALVRAQLRKHIYPRLGRYPITRCETRHWVACFDEINQTKPMTAGRMFQI 175
             YA  KR + +  + Q  + I P LG  P+   +  HW+A   + +Q  P+ AG + + 
Sbjct: 121 SEYANGKRVNASKHKQQFERWIVPHLGSLPLAEIKKPHWIAALKKRSQKYPVAAGYVLRN 180

Query: 176 SKQALRFCKVRRYAASDALAFLTIQDVG--QPSGQRDRVLSD---SELADVWRCTDSDDQ 230
            +QAL++C    +    ++  + + D+G    + +  R++ D     L D+ +  ++ + 
Sbjct: 181 LQQALKWCAKSGHEFDRSVFDIDLDDIGAKHQAKRSQRLVEDDSWQRLIDLLKWIEAGEM 240

Query: 231 QPYYSRLLKMLVLFGARTMEVRLSRWSEWDFTSWIWTVPKEHSKTREK---------IVR 281
            PYY  LL +L+ FGART E+RL+   E++F + +WTVP EH+KT+ K         I R
Sbjct: 241 LPYYKNLLILLITFGARTQELRLATTKEFNFETGVWTVPAEHNKTQAKDQARGDSGEIKR 300

Query: 282 SIPEAIRPWLEELKRETGKTGLLLGEDRTRQAVSLKGRRLFKDFHHNEPWTLHDLRRTFS 341
            IP++I+P L  L  E  K G LLGE +   AVS  G  ++K   H + W LHDLRRT +
Sbjct: 301 PIPDSIKPLLVAL-CEANKGGYLLGEFKEPTAVSAWGGNIWKKLGHEQKWRLHDLRRTVA 359

Query: 342 TGLNNMGIAPHIVELLLGHALPGVMAIYNRSLYLPEKLDALNKWYDRL-ELLAGNHSNIV 400
           TGLN++G+APH+VE LLGH++ GV  IYNRS YLPEK  AL  W +RL ELL+G   N+ 
Sbjct: 360 TGLNDLGVAPHVVESLLGHSIQGVAGIYNRSHYLPEKRQALELWCNRLDELLSGEDCNVF 419

Query: 401 ILKA 404
           +L+A
Sbjct: 420 LLRA 423