Pairwise Alignments

Query, 407 a.a., integrase from Escherichia coli ECRC62

Subject, 397 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  103 bits (258), Expect = 7e-27
 Identities = 102/404 (25%), Positives = 174/404 (43%), Gaps = 41/404 (10%)

Query: 12  LKALLGSEREAPIMIADGEGLSVKVSKQGNVSWVFSYRLGGRGSKLERLTLGRYPDMPLK 71
           +KA      E    + DG G+ ++V   GN  W   YR+ G   K +RL+LG YP++ LK
Sbjct: 5   IKARAAKPAEKVYRLYDGGGMYLEVPPSGNKRWRLKYRVNG---KEKRLSLGVYPNVGLK 61

Query: 72  LAREKREQCRQWLAGGLDPKTE---IELSTEETLKPVTVKDALEYWLVNYARRKRSDEAL 128
            AREKR++ R+ +A G+DP  +    +++       +  ++ ++     +A R  S    
Sbjct: 62  EAREKRDELRRLIAEGIDPAAQRCPQKVAPTADSFEMVAREWMDLRSPAWAPRHLSTTC- 120

Query: 129 VRAQLRKHIYPRLGRYPITRCETRHWVACFDEINQTKPMTAGRMFQISKQALRFC-KVRR 187
              +L  +I+P +G  PI +      +   D +N  + +      + +++ L  C +V R
Sbjct: 121 --QRLEAYIFPHIGPLPIDQ------IGPLDVLNALRIVEKRGAVEAARKTLSICSQVFR 172

Query: 188 YAA------SDALAFLTIQDVGQPSGQRDRVLSDSELADVWRCTDSDDQQPYYSRLLKML 241
           YA       SD    L      +  G    ++   ++  + R  D           L+ L
Sbjct: 173 YAVASARIQSDPCRDLRGALKTRQPGHYAAIVDPKDVGALMRAIDGYSGAMVVRCALRFL 232

Query: 242 VLFGARTMEVRLSRWSEWDFTSWIWTVP-KEHSKTREKIVRSIPEAIRPWLEELKRETGK 300
            L   R  E+R + W+E+D    IWT+P  +  K RE IV    +A+      + R+   
Sbjct: 233 ALTFVRPGELRAAEWNEFDMERRIWTIPAHKMKKRREHIVPLSTQAL-----AVLRDVRA 287

Query: 301 TGLLLGEDRTRQAVSLKGRRLFKD----------FHHNEPWTLHDLRRTFSTGLNNMGIA 350
           T   L      Q+V L+  R   +           +     T H  R   S+ LN +G  
Sbjct: 288 TAPRLNSPMVFQSVRLRSDRGLSENTLLVALRSLGYGQGTMTAHGFRAMASSLLNGLGYN 347

Query: 351 PHIVELLLGHALPG--VMAIYNRSLYLPEKLDALNKWYDRLELL 392
           P ++E  L H + G  + A Y+R+ YL E+   +  + D L+ L
Sbjct: 348 PDVIERQLAH-IEGNKIRAAYHRTEYLEERTAMMQAYADYLDSL 390