Pairwise Alignments

Query, 585 a.a., DUF3300 domain-containing protein from Escherichia coli ECRC62

Subject, 486 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  188 bits (477), Expect = 5e-52
 Identities = 156/549 (28%), Positives = 224/549 (40%), Gaps = 112/549 (20%)

Query: 53  VTLPATVSAPPVTPAVVK---SAFSTAQIDQWVAPVALYPDSLLSQVLMASTYPANVAQA 109
           VTLP T        +V +   ++ S A+++Q +AP+ALYPDSLLS +L+ASTYP  + QA
Sbjct: 17  VTLPFTTPTQAAGVSVSQGSSASLSQAELEQMLAPIALYPDSLLSHILIASTYPLELVQA 76

Query: 110 VQWSHDNPLKQGDAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNLGDAFLAQPQ 169
            +W  D+P    +  +    D+ WD SVK+L+AFP ++  M E+  W Q LG+AFLA   
Sbjct: 77  QRWLEDHPKLSVEQVMSRTEDKGWDPSVKALMAFPNVLQKMSEDLDWTQRLGEAFLANEG 136

Query: 170 DVMDSVQRLRQLAQQTGSLKSSTEQKVITTTKKAVPVKQTVTAPVIPSNTVLTASPVITE 229
            VMD +Q LRQ A +  SL +     V                                 
Sbjct: 137 QVMDGIQSLRQQADKANSLANMDNMAVTR------------------------------- 165

Query: 230 PATTVISIEPANPDVVYIPNYNPTVVYGNWA-NTAYPPVY--LPPPAGEPFIDSFVRGFG 286
            A   I IEP   +VVY+P Y+P VVYG W    AYPPVY       G P+  S    F 
Sbjct: 166 -ANNQIIIEPVRREVVYVPYYDPRVVYGTWRWGVAYPPVYWQFGGYVGNPYRPSH-SYFY 223

Query: 287 YSMGVATTY-ALFSSIDWDDDDHDHHHHDDDDYHHHDGGHRDGNGWQHNGDNINIDVNNF 345
           +S G+  ++   FSS  W    H H     D +H H    R+     H            
Sbjct: 224 WSPGIHISFNYFFSSFHW----HRHKVVVIDHHHSHHYRPRERYSVSHGA---------- 269

Query: 346 NRITGEHLTDKNMAWRHNPNYRNGVPYHDQDMAKRFHQTDVNGGMSATQLPAPTRDSQRQ 405
                         W+H P +R GV YH   + +R++      G          RDS   
Sbjct: 270 ------------QPWKHKPEHRRGVAYHHPVVKERYYSDSKYRG----------RDSHSS 307

Query: 406 AAASQF-----QQRTHAAPVITRDTERQAAAQRFNEAEHYGSYDDFRDFSRRQPLTQQQK 460
            +   F     + R H      RD +R                DD R    R     +++
Sbjct: 308 GSGQHFTSQYAKSREHQDTRDNRDNQR----------------DDKRHDKDRGNQYSRER 351

Query: 461 DAARQRYQSASPEQRQAVREKMQTNPQNQQRREAARERIQSATPE------QRQVFKEKV 514
               Q  Q+   E+R    +  QT+ +N QR    +ER  +   +      Q +  +E+ 
Sbjct: 352 TPNLQHTQAELKERRATPMDSSQTHRENYQREHRQKERNDNGRHDNQVRQNQAKTMREQT 411

Query: 515 Q---QRPLNQ---QQRDNARQRIQSASPEQRQVFREKVQESRPQRLNDSNHTVRLNNEQR 568
               QR   Q   Q  D   + +++ +  QR   R +V+   PQR+       +    QR
Sbjct: 412 NDTWQRQYQQREYQSSDQQPRHVETRAQPQRHEARPEVRRPEPQRIEQPR---QAQPRQR 468

Query: 569 SAVRERLSE 577
             VR R SE
Sbjct: 469 EEVRTRPSE 477