Pairwise Alignments

Query, 783 a.a., DNA polymerase II from Escherichia coli ECRC62

Subject, 795 a.a., DNA polymerase II (RefSeq) from Shewanella loihica PV-4

 Score =  596 bits (1536), Expect = e-174
 Identities = 349/809 (43%), Positives = 482/809 (59%), Gaps = 50/809 (6%)

Query: 5   GFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILQG---EQ 61
           G ILTRH     QG+E+ ++L+T  GP +V +   E + F       R    L G   E 
Sbjct: 5   GRILTRHH----QGSELHYYLSTAEGPARVIVPNGERICFCRTQDELR----LLGDNRES 56

Query: 62  GFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFIT 121
           G R   L L  F  +PV  LY   ++   +  +   + G+++YE+++R  +RYL+ER+I 
Sbjct: 57  GIRSEALNLTTFQDEPVSALYFANNQSFRHLSRIATDKGISLYESELRAEQRYLIERYIA 116

Query: 122 SPVWVEGDIRNGAIVNARLKPHPDYRPPLKW--------VSIDIETTRHGELYCIGLEGC 173
             V   G  ++ A+    L      R  L          VS+D E    GEL+ +GL G 
Sbjct: 117 LDVEFIGRWQSQALDTPTLIAERARRSELDVNREVKLAVVSLDFECAMDGELFSVGLYGQ 176

Query: 174 GQ-----RIVYMLGPENGDASALDFELEYVASRPQ---LLEKLNAWFANYDPDVIIGWNV 225
                  + V M+G       A D   EY++  P    L++ L  WF   DPD+IIGW V
Sbjct: 177 SASGEPYQQVIMVG------EACDSPPEYLSLVPNEAALIKSLLDWFKLNDPDIIIGWAV 230

Query: 226 VQFDLRMLQKHAERYRIPLRLGRDNSELEWR-EHGFKNGVFFAQAKGRLIIDGIEALKSA 284
           V FDL +L + A    IPL LGR  ++L WR ++ ++         GR+++DGI+ LK+A
Sbjct: 231 VTFDLALLYRRARALNIPLTLGRLGTQLSWRVDNKYRPETLILP--GRVVLDGIDWLKAA 288

Query: 285 FWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFH 344
           F+ F SFSLE+VA+ELLGEGK+I N   R +EI   F EDK ALA YN+ DC LV +IF 
Sbjct: 289 FYQFDSFSLESVARELLGEGKAIHNVSHRAEEIATLFREDKAALAHYNITDCRLVWEIFA 348

Query: 345 KTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYV 404
           KT+++ F++ER+ + GL + R G SVAAF +LY P +HRAGYVAP++       SPGGYV
Sbjct: 349 KTDLLAFVMERSRLTGLELGRVGASVAAFNNLYLPHLHRAGYVAPSVPVSDGIESPGGYV 408

Query: 405 MDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQP---------DPEHSTEGFL 455
           MDS+PGLY  +LVLD+KSLYPSIIRTFLIDP GLVEG+            +   +  GFL
Sbjct: 409 MDSKPGLYQHILVLDFKSLYPSIIRTFLIDPKGLVEGLKAEANAGVKGVREGNDTVPGFL 468

Query: 456 DAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRL 515
            A FSR    LPE++ ++   R+EAKR+ N PLSQA+KIIMN+ YGVLG+  C F D RL
Sbjct: 469 GAQFSRNSPILPELIASLSAKREEAKREANAPLSQAIKIIMNSLYGVLGSRGCVFHDARL 528

Query: 516 ASSITMRGHQIMRQTKALIETQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNA 575
           ASSIT+RGH+IM+QTK  IE  G  VIYGDTDSTFV +       +     R LV  +N 
Sbjct: 529 ASSITLRGHEIMKQTKQWIEALGLTVIYGDTDSTFVHISSPERVGDINAFARELVASINE 588

Query: 576 WWAETLQKQ-RLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQ-RMVFKG 633
            W   L+++ +L   LELEYE HF +F MPT+RG+  GSKKRY G  ++ D+  ++VFKG
Sbjct: 589 KWRLKLKQEFQLECYLELEYERHFEQFFMPTLRGSTEGSKKRYVGAYRQEDQSLKLVFKG 648

Query: 634 LETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRQTIDKLMAGELDARLVYRKRLRRPLS 693
           +E VR+DW+PLA++ Q ELY R+F  +    Y++Q +D L  GELD RL++ KRLRR + 
Sbjct: 649 MEQVRSDWSPLAREVQAELYYRLFAKQDVLGYLKQIVDALQRGELDDRLIFSKRLRRNIE 708

Query: 694 EYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYL 753
           +Y     PHV+AA L     Q+ G     +    I Y+ T NG EP+ +    +DY++YL
Sbjct: 709 DYTAKSSPHVKAATL---WCQRSGNDSHGKRGEKISYLMTQNGAEPVQHLLGKIDYQYYL 765

Query: 754 TRQLQPVAEGILPFIEDNFATLMTGQLGL 782
            +Q+ P+++ IL  +  +F  L+  Q+ L
Sbjct: 766 DKQIAPISDPILSILNTSFNNLVAKQMSL 794