Pairwise Alignments

Query, 495 a.a., Transcription termination/antitermination protein NusA from Escherichia coli ECRC62

Subject, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella amazonensis SB2B

 Score =  735 bits (1898), Expect = 0.0
 Identities = 368/499 (73%), Positives = 440/499 (88%), Gaps = 4/499 (0%)

Query: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60
           MNKEIL V EAVSNEKA+PREKIFEALE+ALATATKKKYE +IDVRV IDRK+GD++TFR
Sbjct: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVAIDRKTGDYETFR 60

Query: 61  RWLVVDE----VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQ 116
           RW+VV++    +  P +EITLEAA+YE+  + +G+++ED+IESV FDRITTQTAKQVIVQ
Sbjct: 61  RWMVVEDNGEALENPYREITLEAAQYENPEIQVGEFIEDEIESVVFDRITTQTAKQVIVQ 120

Query: 117 KVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPG 176
           KVREAERA VV+QF + EGEIITGVVKK NRD++ +DLGNNA+ V+ +ED++ RE+FRPG
Sbjct: 121 KVREAERAQVVEQFYDKEGEIITGVVKKSNRDSVIVDLGNNADGVLYKEDLIARESFRPG 180

Query: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236
           DRVR +LY+VRPEARGAQL++TR+KPEMLIELFR+EVPEI +E+I++  AARDPGSRAKI
Sbjct: 181 DRVRALLYAVRPEARGAQLYLTRTKPEMLIELFRVEVPEIADEMIQVMGAARDPGSRAKI 240

Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 296
           AVK+ND+RIDP+GACVGMRGARVQAVS ELGGER+DIVLWDDNPAQFVINAMAPADVASI
Sbjct: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASI 300

Query: 297 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356
           +VDED H+MDIAVEA +LAQAIGRNGQNVRLA+QL+GWELNVMTV D+ AKHQAE+   +
Sbjct: 301 IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLTGWELNVMTVADMNAKHQAESAKVV 360

Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALAT 416
             F   LD+DEDFA VL +EGF++LEE+AYVP+ ELL I+G DE  VEALRERAK A++T
Sbjct: 361 ALFMASLDVDEDFAQVLADEGFTSLEEVAYVPVAELLAIDGFDEDIVEALRERAKAAIST 420

Query: 417 IAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDE 476
            A A EE+L   +P+++LLNLEG+DR LAF LA+RGV TLEDLAEQGIDDL +IE LT+E
Sbjct: 421 RALASEEALDGAEPSEELLNLEGMDRHLAFVLASRGVVTLEDLAEQGIDDLIEIEELTEE 480

Query: 477 KAGALIMAARNICWFGDEA 495
           KAGALIMAARNICWFG+E+
Sbjct: 481 KAGALIMAARNICWFGEES 499