Pairwise Alignments

Query, 495 a.a., Transcription termination/antitermination protein NusA from Escherichia coli ECRC62

Subject, 516 a.a., NusA antitermination factor (NCBI) from Rhodospirillum rubrum S1H

 Score =  419 bits (1076), Expect = e-121
 Identities = 220/491 (44%), Positives = 329/491 (67%), Gaps = 3/491 (0%)

Query: 4   EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFRRWL 63
           E++ V + V+ +K++ RE++F A+E A+  A + KY  E D+R +IDRK+G+    R   
Sbjct: 11  ELVQVADTVARDKSIEREEVFAAMEQAIQKAGRSKYGHEHDIRARIDRKTGEIRLARYIE 70

Query: 64  VVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREAER 123
           VV+EV     +ITL  A+ +   + LG+++ D +  + F RI  QTAKQVIVQKVR+AER
Sbjct: 71  VVEEVENEFTQITLAGAKRKKADIELGEFLVDPLPPIDFGRIAAQTAKQVIVQKVRDAER 130

Query: 124 AMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRGVL 183
                ++++  GEII G+VK+V   N+ +D+G  AEA++ R++++PRE+F+ GDR+R  +
Sbjct: 131 ERQFAEYKDRLGEIINGLVKRVEFGNVIVDMGR-AEALLRRDEVIPREHFKNGDRIRAYI 189

Query: 184 YSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDK 243
             VR E RG Q+F++R+  + + +LF  EVPEI + +IEIK+ ARDPGSRAKIAV +ND 
Sbjct: 190 MDVRQEPRGPQIFLSRTHEQFMAKLFAQEVPEIYDGIIEIKSVARDPGSRAKIAVLSNDH 249

Query: 244 RIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKH 303
            IDPVGACVGMRG+RVQAV  EL GE+IDI+ W  +PA FV+NA+APA+VA +V+DE+ +
Sbjct: 250 AIDPVGACVGMRGSRVQAVVAELQGEKIDIIQWATDPATFVVNALAPAEVAKVVLDEEAN 309

Query: 304 TMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTKYL 363
            +++ V    L+ AIGR GQNVRLAS+L+GW+++++T  +   + Q E       F + L
Sbjct: 310 RIEVVVPDEQLSLAIGRRGQNVRLASKLTGWDIDILTEAEESERRQDEFRIRTQAFIEAL 369

Query: 364 DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQEE 423
           D+D+  A +LV EGF+T+E++A+V + EL EIEG DE     L+ RA+  LA   +  EE
Sbjct: 370 DVDDVIAHLLVTEGFTTVEDVAFVAIAELSEIEGFDEDVASELQNRAQVFLAERERLNEE 429

Query: 424 SLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADI-EGLTDEKAGALI 482
              +    D++  +EG+   +   L  +GV TL+DL +   D+L +I  GL ++ A A+I
Sbjct: 430 RRKELGVVDEMAEIEGLTAAMLVALGEKGVKTLDDLGDLASDELIEIVGGLNEDDANAVI 489

Query: 483 MAARNICWFGD 493
           MAAR   WFG+
Sbjct: 490 MAAR-AHWFGE 499