Pairwise Alignments

Query, 495 a.a., Transcription termination/antitermination protein NusA from Escherichia coli ECRC62

Subject, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella loihica PV-4

 Score =  739 bits (1909), Expect = 0.0
 Identities = 371/499 (74%), Positives = 441/499 (88%), Gaps = 4/499 (0%)

Query: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60
           MNKEIL V EAVSNEKA+PREKIFEALE ALATATKKKYE +I+VRV IDRK+G+++TFR
Sbjct: 1   MNKEILLVAEAVSNEKAVPREKIFEALEIALATATKKKYEGDIEVRVAIDRKTGEYETFR 60

Query: 61  RWLVVDEVTQ----PTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQ 116
           RW+VV++  Q    P +EITLEAARYE+  + +G+Y+ED+IESV FDRITTQTAKQVIVQ
Sbjct: 61  RWMVVEDEGQALENPFREITLEAARYENPEIQVGEYIEDEIESVVFDRITTQTAKQVIVQ 120

Query: 117 KVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPG 176
           KVREAERA +VDQF E EGE+ITGVVKK NR+++ +DLGNNA+AV+ +ED++ RE+FRPG
Sbjct: 121 KVREAERAQIVDQFLEKEGELITGVVKKSNRESVVVDLGNNADAVLFKEDLISRESFRPG 180

Query: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236
           DRVR +LY+VRPEARGAQLF+TR+KP+MLIELFR+EVPEI +E+IEI  AARDPGSRAKI
Sbjct: 181 DRVRALLYAVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADEMIEIMGAARDPGSRAKI 240

Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 296
           AVK+ND+RIDP+GACVGMRGARVQAVS ELGGER+DIVLWDDNPAQFVINAMAPADVASI
Sbjct: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQFVINAMAPADVASI 300

Query: 297 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356
           +VDED H+MDIAVEA +LAQAIGRNGQNVRLA+QLSGWELNVMTV+D+QAKHQAE+   +
Sbjct: 301 IVDEDNHSMDIAVEADSLAQAIGRNGQNVRLATQLSGWELNVMTVEDMQAKHQAESAKIV 360

Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALAT 416
           + F   LD+DEDFA VL +EGF++LEE+AYVP  ELLEI+G DE  VEALRERAK A++T
Sbjct: 361 NLFVSALDVDEDFAQVLADEGFTSLEEVAYVPESELLEIDGFDEEIVEALRERAKAAIST 420

Query: 417 IAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDE 476
            A A EE+L   +P++DLL LEG++R LA+ LA++GV TLEDLAEQGIDDL +IE LT+E
Sbjct: 421 RALASEEALDGAEPSEDLLALEGLERHLAYVLASKGVITLEDLAEQGIDDLIEIEELTEE 480

Query: 477 KAGALIMAARNICWFGDEA 495
           KAG LIMAARNICWFG+EA
Sbjct: 481 KAGELIMAARNICWFGEEA 499