Pairwise Alignments

Query, 495 a.a., Transcription termination/antitermination protein NusA from Escherichia coli ECRC62

Subject, 443 a.a., transcription elongation factor NusA (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  293 bits (750), Expect = 8e-84
 Identities = 156/435 (35%), Positives = 267/435 (61%), Gaps = 9/435 (2%)

Query: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60
           M+ E+   ++ +S +K L R+ + + LE A+ T+  +K+  E+D  V  + ++G+ D ++
Sbjct: 1   MSLELKKAIDQISKDKGLDRDMLIDTLEEAVRTSVARKFGDEMDAEVSYNDETGEIDVYQ 60

Query: 61  RWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVRE 120
             +VV +V  P  EI+LE AR  D S+ L D +  +++     RI  Q+AKQVI+Q++R+
Sbjct: 61  FKIVVKKVENPNSEISLEDARTHDPSVQLDDEMGFRVKIEDLGRIAAQSAKQVIIQRMRD 120

Query: 121 AERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVR 180
           AE+ ++ +++++  GEI++G++++ ++    ++LG   EA++ +E+ +PRE+++ GDRV+
Sbjct: 121 AEQEIIYEEYKDRRGEIVSGIIQRRDKAGWIINLGRT-EALLPKEEQIPREHYKRGDRVQ 179

Query: 181 GVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKT 240
            +L  VR E RG Q+ V+R+  + +  LFR EVPE+ +  ++I   +RDPGSRAK AV +
Sbjct: 180 AILIDVRKEGRGPQVIVSRAHRDYMAALFRREVPEVDDGTVQIMGVSRDPGSRAKAAVMS 239

Query: 241 NDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDE 300
            D+ +DPVGACVG+RG+R+Q +  E+ GERIDIV+W  + A +  NA++PA ++ IVVDE
Sbjct: 240 RDRDVDPVGACVGIRGSRIQNIVQEMRGERIDIVVWSPDIATYARNALSPAVISRIVVDE 299

Query: 301 DKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFT 360
           +++ +++ V    L  AIGR GQNV+LA++L GW++++ T          EA+A      
Sbjct: 300 EENLLEVIVPDDQLTNAIGRKGQNVKLAAKLLGWKIDIYT-----ETRYNEANAIGRGLE 354

Query: 361 KYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQA 420
           +   + E      +  GF ++E L     +EL    GL    +  LR  A N LA  AQ 
Sbjct: 355 QIASVAEISIEQFIAAGFQSIERLREADDEELASALGLAPGKIADLR-AAINFLAPQAQD 413

Query: 421 QEESLG--DNKPADD 433
             ++    D +PA +
Sbjct: 414 DADATAEPDAEPAPE 428