Pairwise Alignments

Query, 495 a.a., Transcription termination/antitermination protein NusA from Escherichia coli ECRC62

Subject, 544 a.a., NusA antitermination factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  386 bits (991), Expect = e-111
 Identities = 212/459 (46%), Positives = 297/459 (64%), Gaps = 3/459 (0%)

Query: 4   EILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSG--DFDTFRR 61
           E+L   EAV+ EK +    + EA+E +LA A K +Y  E+D+RV IDRK+G   F   R 
Sbjct: 10  ELLQTAEAVAREKMIDPGLVIEAMEESLARAAKSRYGSEMDIRVSIDRKTGVATFTRVRT 69

Query: 62  WLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQKVREA 121
            +  +E+     E+T+E A+   +   +GD + DQ+  V   RI  Q+AKQVI+QKVREA
Sbjct: 70  VVEDEELENYQAELTVEQAKPYLDDPKVGDTIVDQVPPVEMGRIAAQSAKQVILQKVREA 129

Query: 122 ERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPGDRVRG 181
           ER    ++F++  G II GVVK+    N+ +D+G   E V+ R + + RE++RP DR+R 
Sbjct: 130 ERDRQYEEFKDRAGTIINGVVKREEYGNVIVDIGRG-EGVLRRNEKIGRESYRPNDRIRC 188

Query: 182 VLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTN 241
            +  VR E RG Q+F++R+ PE + ELF++EVPEI + +IEIKA ARDPGSRAKIAV + 
Sbjct: 189 YIKDVRREVRGPQIFLSRTAPEFMAELFKMEVPEIYDGIIEIKAVARDPGSRAKIAVISY 248

Query: 242 DKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDED 301
           D  IDPVGACVGMRG+RVQAV  EL GE+IDI+ W+++   F++NA+ PA+V+ +V+DED
Sbjct: 249 DGSIDPVGACVGMRGSRVQAVVNELQGEKIDIIPWNEDQPTFLVNALQPAEVSKVVLDED 308

Query: 302 KHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIDTFTK 361
              +++ V    L+ AIGR GQNVRLASQL+G ++++MT      + QAE     + F +
Sbjct: 309 AERIEVVVPDEQLSLAIGRRGQNVRLASQLTGLDIDIMTEAQESERRQAEFAERTNMFVE 368

Query: 362 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALATIAQAQ 421
            LD+DE  A +LV EGF+ LEE+AYV  +ELL I+G DE T E L+ RA+  L   A+  
Sbjct: 369 ALDVDEVLAQLLVSEGFTNLEEVAYVEQEELLVIDGFDEDTAEELQTRAREFLEEQAKKA 428

Query: 422 EESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLA 460
            E   +    D L+  EG+   +   LAA GV TLED A
Sbjct: 429 LERAREMGVEDSLVEFEGLTPQMLEALAADGVKTLEDFA 467



 Score = 25.0 bits (53), Expect = 0.007
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 440 VDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAAR 486
           VD  LA  L + G   LE++A    ++L  I+G  ++ A  L   AR
Sbjct: 372 VDEVLAQLLVSEGFTNLEEVAYVEQEELLVIDGFDEDTAEELQTRAR 418