Pairwise Alignments

Query, 495 a.a., Transcription termination/antitermination protein NusA from Escherichia coli ECRC62

Subject, 499 a.a., transcription elongation factor NusA (RefSeq) from Shewanella sp. ANA-3

 Score =  729 bits (1883), Expect = 0.0
 Identities = 365/499 (73%), Positives = 436/499 (87%), Gaps = 4/499 (0%)

Query: 1   MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVQIDRKSGDFDTFR 60
           MNKEIL V EAVSNEKA+PREKIFEALE+ALATATKKKYE +IDVRV IDRK+G ++TFR
Sbjct: 1   MNKEILLVAEAVSNEKAVPREKIFEALETALATATKKKYEGDIDVRVSIDRKTGAYETFR 60

Query: 61  RWLVVDE----VTQPTKEITLEAARYEDESLNLGDYVEDQIESVTFDRITTQTAKQVIVQ 116
           RW+V+D+    +  P +EITLEAARYE+  +  GDY+EDQIESV FDRITTQTAKQVIVQ
Sbjct: 61  RWMVIDDNGVALENPYREITLEAARYENPEIQPGDYIEDQIESVAFDRITTQTAKQVIVQ 120

Query: 117 KVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEAVILREDMLPRENFRPG 176
           KVREAERA VV+QF++ EGE+ITGVVKK  R+++ +DLGNNA+ V+ RED++ RE+FRPG
Sbjct: 121 KVREAERAQVVEQFQDKEGELITGVVKKATRESVVVDLGNNADGVLFREDLISRESFRPG 180

Query: 177 DRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKI 236
           DRVR +LYSVRPEARGAQLF+TR+KP+MLIELFR+EVPEI +E+IE+  AARDPG+RAKI
Sbjct: 181 DRVRALLYSVRPEARGAQLFLTRTKPDMLIELFRVEVPEIADELIEVMGAARDPGARAKI 240

Query: 237 AVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASI 296
           AVK+ND+RIDP+GACVGMRGARVQAVS ELGGER+DIVLWDDNPAQ+VINAMAPADVASI
Sbjct: 241 AVKSNDRRIDPIGACVGMRGARVQAVSNELGGERVDIVLWDDNPAQYVINAMAPADVASI 300

Query: 297 VVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAI 356
           +VDED H+MDIAVEA +LAQAIGRNGQNVRLA+QL+GWELNVMTV+D+  KHQAE+    
Sbjct: 301 IVDEDNHSMDIAVEAESLAQAIGRNGQNVRLATQLTGWELNVMTVEDMNKKHQAESAKVK 360

Query: 357 DTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALAT 416
             F   LD+DEDFA VL +EGF++LEE+AYVP+ ELL I+G DE  VEALRERAK A++T
Sbjct: 361 SLFINALDVDEDFAQVLADEGFTSLEEVAYVPVSELLAIDGFDEDIVEALRERAKAAIST 420

Query: 417 IAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDE 476
            A A EE+L   +P+++LL LEGV+R LA+ LA++G+ TLEDLAEQGIDDL +IE LT+E
Sbjct: 421 RALATEEALDGVEPSEELLALEGVERHLAYVLASKGIVTLEDLAEQGIDDLIEIEELTEE 480

Query: 477 KAGALIMAARNICWFGDEA 495
           KAGALIMAARNICWFG+EA
Sbjct: 481 KAGALIMAARNICWFGEEA 499