Pairwise Alignments

Query, 318 a.a., DNA-binding transcriptional regulator YqhC from Escherichia coli ECRC62

Subject, 288 a.a., AraC family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  206 bits (524), Expect = 5e-58
 Identities = 115/286 (40%), Positives = 168/286 (58%), Gaps = 7/286 (2%)

Query: 29  LADKVNKMKNKENSLSELLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFR 88
           +A+ ++++   E     +LP ++L       AR P+ Y  GI+I+  G K  Y++ RVF 
Sbjct: 4   IAELMSELAPDEGMNDSVLPGIKLFRCSAYGARGPLCYSQGIMIVGQGKKRIYLDNRVFD 63

Query: 89  YDANEYLLLTVPLPFECETYATSEVPLAGVRLNVDILQLQELLMDIGEDEHFQPSMAAS- 147
           YD    L++TVP+P ECET+A+ E P+  + +++D+ QL  L+  +  D H +   A + 
Sbjct: 64  YDPQNTLVMTVPMPVECETFASKEEPVLVMMIDIDLAQLNRLIPVM--DNHHRVPQALNE 121

Query: 148 ----GINSATLSEEILCAAERLLDVMERPLDARILGKQIIREILYYVLTGPCGGALLALV 203
               G   A   E I C+  RLL  ++ PL+A  LG+ ++ EILY +L  P    L AL 
Sbjct: 122 SRLPGYFIAPTGEAIECSIHRLLQALQSPLEAEALGEAMVLEILYRLLALPNAAPLYALA 181

Query: 204 SRQTHFSLISRVLKRIENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYLKNYR 263
              T  S I + L  +   Y  ++ V+QLAA  NMS SAFH  FK VT++SP+QYLK  R
Sbjct: 182 LSHTRLSRIDKALSYLHKHYAASIEVDQLAALVNMSPSAFHRCFKEVTASSPIQYLKKVR 241

Query: 264 LHKARMMIIHDGMKASAAAMRVGYESASQFSREFKRYFGVTPGEDA 309
           L+KA+ ++   G+K   AA+ VGYES +QFSREFKRYF  +PGE A
Sbjct: 242 LNKAKELLQRPGVKVKQAAIEVGYESPAQFSREFKRYFSHSPGECA 287