Pairwise Alignments

Query, 356 a.a., LPS export ABC transporter permease LptF from Escherichia coli ECRC62

Subject, 369 a.a., hypothetical protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  111 bits (277), Expect = 3e-29
 Identities = 86/353 (24%), Positives = 163/353 (46%), Gaps = 20/353 (5%)

Query: 3   LVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALE 62
           +V  Y+ +   +  + ++  L+ +F S    R L +A++G     +V+ ++   +     
Sbjct: 2   IVFRYLFKEVFKAQIAVLLVLLTVFISQHFVRVLADASDGEFPASLVVTLLGLNLPYLAV 61

Query: 63  MLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGR 122
           ++LP+ L++ + +  G+MY ++E+      G S   + +  L LA+   +F   LS++  
Sbjct: 62  LVLPLSLFLGILMAHGRMYAENEMVVFHGVGVSEWYVTRVTLLLAVLNMLFTGYLSLFVT 121

Query: 123 PWAYTQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY----- 177
           PWA  +  Q+ +++QSE  +  L   +F T+ +GR +L       +N L    +      
Sbjct: 122 PWAEERQNQVLEKAQSEAGLAALVQGRFQTSPDGRAVLFVEKIGKDNELEKVFVAQLPDP 181

Query: 178 TSTANRTRIFRARSVDVVDPSPEKPTVMLHNGTAY-----LLDHQGRDDNEQIYRNLQLH 232
                +  +  A    VV+ +     + L++G  Y      LD+Q  +        +Q+ 
Sbjct: 182 DDEHGQINLVSAAGGKVVEDASGAQQLKLNDGVRYQGSPKSLDYQVLEFGGY---GMQIK 238

Query: 233 LNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPRQG 292
              +D+    K  A  + +L     P   AEL WR +  L   LM L+A+ ++RV  RQG
Sbjct: 239 EQEVDERRR-KMSALPLNQLLDQNTPEAVAELHWRIAIPLAIPLMTLIAVPMARVNVRQG 297

Query: 293 RFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLW------LVPGLMLMG 339
           +F+ +LP  LL++  F      R  + +  +P   G+W      LV G+ML+G
Sbjct: 298 KFAKMLPAILLYLGYFGLMVAGRKALEDEVVPAFMGMWWIHLSALVMGIMLLG 350