Pairwise Alignments

Query, 356 a.a., LPS export ABC transporter permease LptF from Escherichia coli ECRC62

Subject, 370 a.a., permease YjgP/YjgQ family protein (RefSeq) from Shewanella loihica PV-4

 Score =  114 bits (285), Expect = 4e-30
 Identities = 85/350 (24%), Positives = 165/350 (47%), Gaps = 11/350 (3%)

Query: 3   LVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTLALDVVLDIVFYKVLIALE 62
           +V  Y++R   +  + ++  L+ IF S    R L +A++G     +V+ ++   +     
Sbjct: 2   IVFRYLIREVLKAQMAVLLVLLAIFISQHFVRVLADASDGEFPASLVMTLLGLNLPYLAV 61

Query: 63  MLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKAVLYLAIPLSIFVTLLSMYGR 122
           +++P+ L++ + V  G+MY +SE+    + G S   + +  L LA+   +F   L +Y  
Sbjct: 62  LVVPLSLFLGILVAHGRMYAESEMVVFHSVGVSEWYVTRVTLLLAVANMLFTGFLVIYVT 121

Query: 123 PWAYTQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMILSQTVDQDNNRLTDALIY----- 177
           PWA     ++ + +QSE  +  L   +F T+ NGR +L       +N+L    +      
Sbjct: 122 PWAEETQNRVLENAQSEAGLAALTQGRFQTSPNGRAVLFVERIGRDNQLDKVFVAQLPDP 181

Query: 178 TSTANRTRIFRARSVDVVDPSPEKPTVMLHNGTAYLLDHQGRDDNEQIY---RNLQLHLN 234
              A+++ I  A+   V++    +  + L++G  Y    Q + D + +      +Q+   
Sbjct: 182 EDGASQSNIVVAQGGSVIEDESGEQRLKLNDGIQY-QSKQNQLDYQVVQFAGYEMQIKEQ 240

Query: 235 PLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLTALLMALLAISLSRVKPRQGRF 294
            +DQ    K  A  + +L  +  P   AE  WR +  L    M L+A+ ++RV  RQG+F
Sbjct: 241 EVDQRRR-KLSALPIDQLLDTEGPEAVAEFHWRLAIPLAIPFMTLIAVPMARVNVRQGKF 299

Query: 295 STLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLV-PGLMLMGLLML 343
           + + P  LL++  F      R  + +  IP   G+W +    + +G+L+L
Sbjct: 300 AKMFPAILLYLGYFGLMIAGRKALEDEVIPAYLGMWWIHASALFLGMLLL 349