Pairwise Alignments

Query, 326 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Escherichia coli ECRC102

Subject, 347 a.a., pseudouridine synthase, RluA family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  194 bits (493), Expect = 3e-54
 Identities = 125/320 (39%), Positives = 168/320 (52%), Gaps = 30/320 (9%)

Query: 19  RLDQALAEMFPD---YSRSRIKEWILDQRVLVNGKLCDKPKEKVLGGEQVAINAEIEEEA 75
           RLD+ALA   P+    SRSR+ + I    V    ++   PK +V  G+ + +      E 
Sbjct: 22  RLDRALARDVPEGLGLSRSRLVKLIEAGDVRRGAEVLASPKARVAAGDVLTLRLGAPAEV 81

Query: 76  RFEPQDIPLDIVYEDEDIIVINKPRDLVVHPGAGNPDGTVLNALLHY----YPPIADVPR 131
               + IPLD+++ED D+IV+NKP  +VVHP  G+P GT++NAL+H+       I    R
Sbjct: 82  PLVAEAIPLDVIFEDADLIVVNKPAGMVVHPAPGSPAGTLVNALMHHCGDSLSGIGGEKR 141

Query: 132 AGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIG-------------- 177
            GIVHR+DKDT+GL+VVAK+  A   L        + R Y+A+  G              
Sbjct: 142 PGIVHRIDKDTSGLLVVAKSDHAHQGLAAQFAAHSVERIYDALVHGVPEASDPRLRGLPM 201

Query: 178 -HMTAGGT--VDEPISRHPTKRTHMAV--HPMGKPAVTHYRIMEHF---RVHTRLRLRLE 229
                GG   +   ++RH T R   AV     G+ AVT  R+   F        L   LE
Sbjct: 202 VRFEPGGVLCLRASLARHRTDRQRQAVVAEGQGRHAVTRARVEARFGDPAGVAHLACWLE 261

Query: 230 TGRTHQIRVHMAHITHPLVGDPVYGGRPR-PPKGASEAFISTLRKFDRQALHATMLRLYH 288
           TGRTHQIRVH+AHI H L+GDPVYGGR R   K  S   ++    F RQALHA  L   H
Sbjct: 262 TGRTHQIRVHLAHIGHGLLGDPVYGGRKRLSAKAFSPQALAAAEAFPRQALHARTLGFVH 321

Query: 289 PISGIEMEWHAPIPQDMVEL 308
           P++G  + + AP+P DM  L
Sbjct: 322 PVTGAALSFAAPMPADMAAL 341