Pairwise Alignments

Query, 692 a.a., flagellar biosynthesis protein FlhA from Escherichia coli ECRC100

Subject, 699 a.a., flagellar biosynthesis protein FlhA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  711 bits (1834), Expect = 0.0
 Identities = 365/698 (52%), Positives = 509/698 (72%), Gaps = 11/698 (1%)

Query: 3   NLAAMLRLPTNLKSTQWQILAGPILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVA 62
           ++ A L     LK + ++ +  P+L+L  L+M+VLP+P F+LD+LF+FNIAL+++VLLVA
Sbjct: 2   DVKATLGQVKQLKLSSFKGIGTPLLVLAALAMIVLPIPPFLLDILFSFNIALALVVLLVA 61

Query: 63  MFTQRTLEFAAFPTILLFTTLLRLALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGN 122
           ++T R L+FAAFPT+LL  TLLRLALNVASTR++L+EGH G  AAGKV+EAFG  ++GGN
Sbjct: 62  IYTDRPLDFAAFPTVLLVATLLRLALNVASTRVVLLEGHNGGDAAGKVIEAFGSVVIGGN 121

Query: 123 FAIGIVVFVILVIINFMVITKGAGRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAK 182
           +A+G+VVF+IL+IINF V+TKGAGRIAEV ARF LD MPGKQMAIDADLNAG+I +D+A+
Sbjct: 122 YAVGVVVFIILIIINFAVVTKGAGRIAEVSARFTLDAMPGKQMAIDADLNAGIINQDQAR 181

Query: 183 KRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVINVVGGLLVGVLQHGMSMGHAAESY 242
            RR+EVT+EADFYG+MDGASKFV+GDAIAGI+I+VIN++GG ++G++QHG++   AAE Y
Sbjct: 182 TRRAEVTREADFYGAMDGASKFVKGDAIAGIMILVINILGGFIIGIVQHGLTFAQAAEIY 241

Query: 243 TLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQDVGEQMVNQLFSNPSVMLLSAAVLGLL 302
           TLLTIGDGLVAQIP L++S AA ++VTR +   D+G+ +++Q+F +   + ++A VL ++
Sbjct: 242 TLLTIGDGLVAQIPGLLLSIAAALMVTRQNESGDMGQMLMSQMFDSHKSLGIAAGVLFVM 301

Query: 303 GLVPGMPNLVFLLFTAGLLGLAWWI--RGREQKAPA----EPKPVKMAENNAVVEATWND 356
           G+VPGMP++ FL F     G A+++  R   ++A A    +  P +  E     E +W+D
Sbjct: 302 GIVPGMPHMAFLSFAVMTGGAAYFVFKRNEAKRAKALEQVKTGPTERTEREP-KELSWDD 360

Query: 357 VQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPA 416
           V   D++G+EVGYRLIP+VD  Q GELL RI+ +RKK +QE+GFL P VHIRDN+DL P 
Sbjct: 361 VHHVDTIGLEVGYRLIPLVDKGQGGELLSRIKGVRKKLSQELGFLVPAVHIRDNLDLSPN 420

Query: 417 RYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQI 476
            YRI + GV +G  D      LAINPG   G L G  T DPAFGL A+WI   L+E AQ 
Sbjct: 421 AYRISLMGVVVGEADIRHDCELAINPGQVYGKLDGIETRDPAFGLEAVWIAPELREHAQT 480

Query: 477 QGYTVVEASTVVATHLNHLISQHAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTT 536
            GYTVV+A+TVVATH++ +++ +AA+L G +EAQQL+D +A+  PKL +  +P V+ L  
Sbjct: 481 LGYTVVDAATVVATHISQILTNNAAKLLGYEEAQQLMDMLAKHSPKLVDGFIPDVMPLGN 540

Query: 537 LHKVLQNLLDEKVPIRDMRTILETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDE 596
           + KV+QNLL+E V +RD+RTI++TL E+    +D   LTA VR+AL R I Q+    + E
Sbjct: 541 VVKVMQNLLNEGVSVRDLRTIVQTLLEYGTKSNDTEVLTAAVRIALKRMIVQEISGPELE 600

Query: 597 VHVIGLDTPLERLLLQALQGGGG----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNH 652
           + VI L   LE++L Q++Q  GG    +EPGLA+R+     +A  +QEM+G P +LL + 
Sbjct: 601 IPVITLAPELEQMLHQSMQATGGDGPNIEPGLAERMQQSLADAAQKQEMVGQPAILLTSG 660

Query: 653 ALRPLLSRFLRRSLPQLVVLSNLELSDNRHIRMTATIG 690
            LR  LSRF++ ++P L V+S  E+ D + IR+ + +G
Sbjct: 661 MLRATLSRFVKYTIPNLRVISYQEIPDEKQIRIVSAVG 698