Pairwise Alignments

Query, 333 a.a., integrase from Escherichia coli ECRC100

Subject, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

 Score =  241 bits (616), Expect = 1e-68
 Identities = 149/348 (42%), Positives = 207/348 (59%), Gaps = 20/348 (5%)

Query: 1   MSVRKIPSGK---WLCECYPYGASGKRIRKQFATKSEALSYERRLMNSRVGDEFQDGSGP 57
           MSVR +  G    WLCECYP G  GKR+RK+FATK EA +YE  +M   V D+   GS P
Sbjct: 1   MSVRNLKDGSKKPWLCECYPQGREGKRVRKRFATKGEATAYENFIMRE-VDDKPWMGSKP 59

Query: 58  ---RLSELIARWFEMYGKTLSSGAERKVKLEAICSRLGDPFASQFDKNMFATYRERRLSG 114
              RLSEL+  W++++G T+ SG     K       LGDP AS F    +  +R  R+S 
Sbjct: 60  DNRRLSELLETWWQVHGHTIKSGKVVYRKTALTIKELGDPIASTFTSKQYLAFRASRVS- 118

Query: 115 EWNPKGKKKLSEATVNREQSYLHAVFAELKRLGEWSGENPLTGIRKFREEEKELAFLYVD 174
            +N K  K LS    N + + L  +F+ L +  +W+  NPL  I   +  ++ LA+L   
Sbjct: 119 HFN-KENKSLSPTYQNFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLDKA 177

Query: 175 EIERLL--IACDESRNKDLGV-----VVRIGLATGARWSEAEGLKQSQVLPGRITFVKTK 227
           +I+  L  +   ES  + + +     + +I LATGAR SEA  L++SQ+   ++TFV+TK
Sbjct: 178 DIQPFLQRLGGFESDGRSVSIPEIVLIAKICLATGARISEALSLERSQISEFKLTFVETK 237

Query: 228 GKKNRTVPISPQL--QAMLPKKRGA-LFSPCYEAFDAAIKRAKIE-LPDGQLTHVLRHTF 283
           GK+ R+VPIS  L  + ML       +FS  Y +    IK+A  + +P+GQ THVLRHTF
Sbjct: 238 GKRIRSVPISENLYKEIMLASSSSTKIFSTTYGSAHRYIKKALPDYVPEGQATHVLRHTF 297

Query: 284 ASHFMMRGGNILVLQKILGHSDIKMTMRYAHFAPGHLEAAVELNPFDN 331
           A+HFMM  G+IL+LQ+ILGH  I+ TM YAHF+P HL  AV+LNP +N
Sbjct: 298 ATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQLNPLEN 345