Pairwise Alignments

Query, 396 a.a., lytic murein transglycosylase B from Escherichia coli ECRC100

Subject, 354 a.a., membrane-bound lytic transglycosylase, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  196 bits (498), Expect = 9e-55
 Identities = 115/290 (39%), Positives = 163/290 (56%), Gaps = 18/290 (6%)

Query: 107 GFDRQQLQEILSQAKRLDSVLRLMDNQAPTTSVKPPSGPNGAWLRYRKKFITPDNVQNGV 166
           GF + +++  L++AK   +V+   D  +     KP       W +Y   F+T   +  G+
Sbjct: 65  GFTKAEVETFLAKAKYNQAVI---DAISRPWEAKP-------WHKYYPIFLTEKRLDAGL 114

Query: 167 VFWNQYEDALNRAWQVYGVPPEIIVGIIGVETRWGRVMGKTRILDALATLSFNYPRRAEY 226
            FW ++E A+ +A   Y V P+IIV IIG+ET +G+  G   ++DAL TL F Y  RA +
Sbjct: 115 AFWKKHEKAIAKAASNYQVEPQIIVAIIGIETFYGQYTGNYPVIDALYTLGFYYEPRATF 174

Query: 227 FSGELETFLLMARDEQDDPLNLKGSFAGAMGYGQFMPSSYKQYAVDFSGDGHINLW-DPV 285
           F  E    + + ++E  D  +LKGS+AGAMG+GQF+PSSY+ YAVDF G G+ +L   P 
Sbjct: 175 FRKEFGELMKLVKEEHLDIDSLKGSYAGAMGFGQFIPSSYRHYAVDFDGSGNRDLLKSPD 234

Query: 286 DAIGSVANYFKAHGWVKGDQVAVMANGQAPGLPN-----GFKTRYSISQLAA--AGLTPQ 338
           DAIGSVANYF  HGW     VA+    ++   P      G K  Y +S + +    LT  
Sbjct: 235 DAIGSVANYFHEHGWQLNAPVALPLVNRSANAPKAKVWAGEKLHYKVSDILSPTLSLTNA 294

Query: 339 QPLGNHQQASLLRLDVGTGYQYWYGLPNFYTITRYNHSTHYAMAVWQLGQ 388
           + +   Q+A L+ L+      YW GL NFY ITRYN S  Y+MAV+Q  Q
Sbjct: 295 RDVDASQKAMLIELEQVGSKDYWLGLNNFYVITRYNRSPLYSMAVYQFSQ 344