Pairwise Alignments

Query, 692 a.a., formate hydrogenlyase transcriptional activator FlhA from Escherichia coli ECRC100

Subject, 482 a.a., sigma-54 dependent trancsriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  308 bits (788), Expect = 5e-88
 Identities = 169/342 (49%), Positives = 228/342 (66%), Gaps = 5/342 (1%)

Query: 349 AYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLIL 408
           A +++  L E+L +EN  L  +L +   E   I G SE + S+++Q+++VA + STVLI 
Sbjct: 146 ALKQVQALSEKLANENDYLLTELASHRQEVN-ISGESETIQSLIQQIKLVANTSSTVLIN 204

Query: 409 GETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGR 468
           GE GTGKEL+AR IH LS R+++ +V +NCAA    LLES+LFGHE+GAFTGA+++R GR
Sbjct: 205 GENGTGKELVARNIHALSDRSDQPLVSVNCAAFSPTLLESELFGHEKGAFTGATSRRKGR 264

Query: 469 FELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKM 528
           FELA + +LFLDEV ++ LE Q KLLRV+QEQEFER+GS+  I+ D+RL+ AT+ DL K 
Sbjct: 265 FELAHQGTLFLDEVAELSLEAQSKLLRVIQEQEFERVGSSTPIKVDIRLVTATHHDLLKR 324

Query: 529 VADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRT 588
           V    FR DLYYRLNVFP+H+PPLRER +DIPLL       +  +LG+ I  +  + ++ 
Sbjct: 325 VEQGLFRMDLYYRLNVFPLHVPPLRERLQDIPLLVSDILLNLNHKLGKKIKGVSKQGMQH 384

Query: 589 LSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDIALPEPETPPAATVVAQEGEDEYQL 648
           L    WPGNVREL+NVIER  +L  G +LQ+     A P+P+       + Q    E   
Sbjct: 385 LMAYHWPGNVRELQNVIERQTILCHGQILQIPALQ-AEPQPQDKGEFQTLQQV---EAAH 440

Query: 649 IVRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMKRLGIDKSA 690
           I R LK  N  ++GP GAA  LGL  +TL SRM +LGI + A
Sbjct: 441 IRRTLKRLNWRISGPNGAANLLGLPASTLRSRMLKLGIKRPA 482