Pairwise Alignments

Query, 758 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Escherichia coli ECRC100

Subject, 841 a.a., ATP-dependent Clp protease (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  537 bits (1383), Expect = e-156
 Identities = 315/820 (38%), Positives = 476/820 (58%), Gaps = 99/820 (12%)

Query: 17  AREHRHEFMTVEHLLLALLSNPSAR--EALEACSVDLVALRQELEAFI--EQTTPVLPAS 72
           A   R   +  EHLLL +L +   +  E L   + +L A++Q++EA +  E    +LP +
Sbjct: 20  ANRLRSRHIGPEHLLLGMLRDGEGKAIEILSKLNTNLAAVKQQIEARLKTEADDMLLPDA 79

Query: 73  EEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRL 132
           E            ++L+  +   +    N     +VL+AI  E+ + AA +L  ++V+ +
Sbjct: 80  EIPLSNDAA----KILKMCILEARGMKSNIADTEHVLLAILRERNNMAASVLEANDVNYV 135

Query: 133 DV---------VNFISHGTRKDEPTQSSDPGS------------QPNSEEQAGGEERMEN 171
            V         VN        D+  + S P S            Q  S++ A     ++N
Sbjct: 136 KVLEQATLQPDVNSGMGFPEDDDDEEMSSPRSGGSGSEERQQQAQTASKKPANDTPVLDN 195

Query: 172 FTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231
           F T++ + A  G +DP++GREKE+ER  Q+L RR+KNNP+L+GE GVGK+AI EGLA RI
Sbjct: 196 FGTDMTKAAEEGRLDPVVGREKEIERLAQILSRRKKNNPILIGEPGVGKSAIVEGLALRI 255

Query: 232 VQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTII 291
           +Q  V  ++ D  + +LD+ +++AGTKYRG FE+R +++L +L+++ N ILFIDEIHTI+
Sbjct: 256 IQKKVSRILFDKRVVALDMTAVVAGTKYRGQFEERIRSILNELQRNPNVILFIDEIHTIV 315

Query: 292 GAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSI 351
           GAG+A+ G +DAAN++KP L+ G+I+ IG+TT  E+    EKD AL RRFQK+ +   + 
Sbjct: 316 GAGSAA-GSMDAANMLKPALARGEIQCIGATTLDEYRKNIEKDGALERRFQKVMVEPTTA 374

Query: 352 EETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARL 411
            ET+QI+  +K KYE HH+V YT +A+ A V+L  +YI DR+ PDKAID +DEAG+R  L
Sbjct: 375 AETLQILRNIKDKYEDHHNVNYTDEALEACVKLTDRYITDRNFPDKAIDALDEAGSRVHL 434

Query: 412 MPV-----------------SKRKKTVNVADIE--------------------------- 427
             V                 SK+ + V   + E                           
Sbjct: 435 TNVNVPKEIEEQEKLIEEAKSKKNEAVKSQNFELAASFRDKEKELTLQLDEMKREWENSL 494

Query: 428 -------------SVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAI 474
                        +V++ ++ IP + ++Q++   L  + + L+  V  QD AIE L +AI
Sbjct: 495 KENRQTVDAEEIANVISMMSGIPVQRMAQAEGIKLAGMKEDLQSKVIAQDPAIEKLVKAI 554

Query: 475 KMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELLRFDMSEYMERHTVS 531
             +R GL   +KP+G+F+F GPTGVGKT +  +L+K +      L+R DMSE+ME+ TVS
Sbjct: 555 LRSRVGLKDPNKPIGTFMFLGPTGVGKTHLAKELAKYMFGSSDALIRIDMSEFMEKFTVS 614

Query: 532 RLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNG 591
           RL+GAPPGYVG+++GG LT+ V + P++++LLDEIEKAHPDVFN+LLQVMD G LTD+ G
Sbjct: 615 RLVGAPPGYVGYEEGGQLTEKVRRKPYSIVLLDEIEKAHPDVFNLLLQVMDEGRLTDSYG 674

Query: 592 RKADFRNVVLVMTTNAGVRETER--KSIGLIHQDNSTD-------AMEEIKKIFTPEFRN 642
           R  DF+N V++MT+N G R+ +   + +G   Q    D         + + K F PEF N
Sbjct: 675 RMVDFKNTVIIMTSNIGTRQLKEFGRGVGFATQSRLDDKEFSRSVIQKALNKSFAPEFIN 734

Query: 643 RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGAR 702
           R+D II FD LS + I +++D  +  L  +++  G  L +  EA+ ++AEKGYD   GAR
Sbjct: 735 RVDEIITFDQLSLEAITKIIDIELKGLYDRIESIGYKLVIDDEAKRFVAEKGYDVQFGAR 794

Query: 703 PMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNEL 742
           P+ R IQ +L+  L+  ++  SL +   + V+L+KEK EL
Sbjct: 795 PLKRAIQTHLEDGLSELIITSSLKEKDVIQVSLNKEKGEL 834