Pairwise Alignments

Query, 285 a.a., deoxyribonuclease IV from Escherichia coli ECOR38

Subject, 300 a.a., apurinic endonuclease Apn1 (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  149 bits (377), Expect = 6e-41
 Identities = 97/274 (35%), Positives = 136/274 (49%), Gaps = 12/274 (4%)

Query: 8   VSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTSAQIL 67
           +S AGGL  A   A  + A A  +FT NQR+W     +      F+AA   +      + 
Sbjct: 1   MSVAGGLWRAVEHAVSVGAQALQVFTANQRRWEVPCPSDGDARRFRAAVSDWG--GGFVA 58

Query: 68  PHDSYLINLGHPVAEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLM---QISEEDCLA 124
            H SYL NL  P   A  +S      E+ RC  LG+  +  HPG+HL    + + E  + 
Sbjct: 59  SHASYLFNLASPDEGAGARSVRGLAAEIGRCGLLGIPWVVLHPGAHLEGGDRQAVEHGVH 118

Query: 125 RIAESINIALDKT-------QGVTAVIENTAGQGSNLGFKFEHLAAIIDGVEDKSRVGVC 177
           R+A  +  A D          GV  ++ENTAGQG+ LG     L  I+D    + R+GVC
Sbjct: 119 RVAARLAAAFDAAGHLHPHADGVGVLLENTAGQGTCLGGDVADLGRIVDACPARERLGVC 178

Query: 178 IDTCHAFAAGYDLRTPAECEKTFADFARIVGFKYLRGMHLNDAKSTFGSRVDRHHSLGEG 237
           IDT HA AAGYDL T     +  A     VG   +R  H+ND+ +  G+R DRH  +G G
Sbjct: 179 IDTAHACAAGYDLATEEGYARLMAAVEGAVGLGRVRLFHVNDSATPCGARSDRHAHIGLG 238

Query: 238 NIGHDAFRWIMQDDRFDGIPLILETINPDIWAEE 271
           ++G   F  +++D RF   P++LET      AE+
Sbjct: 239 HVGAAGFARLVRDPRFAAHPMVLETHKGKDMAED 272