Pairwise Alignments

Query, 392 a.a., outer membrane protein assembly factor BamB from Escherichia coli ECOR38

Subject, 588 a.a., Pyrrolo-quinoline quinone (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 55.5 bits (132), Expect = 4e-12
 Identities = 44/166 (26%), Positives = 76/166 (45%), Gaps = 15/166 (9%)

Query: 31  KMSPLPTV--ENQFTPTTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADD 88
           + SPL T+  +N      AW+ S+G G         P + D ++Y       V A++ + 
Sbjct: 49  RYSPLETLNKDNVENLVPAWAFSLG-GEKQRGQETQPLIYDGIMYITGSYSRVYAIDVET 107

Query: 89  GKEIWSVNLAEKDGWFSKDPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKV- 147
           GKEIW  +    +G       +  GG  + G   Y G+  A++ AL+   G V W+ K+ 
Sbjct: 108 GKEIWQYDARLPEGILPCCDVINRGGA-IYGDKFYFGTLDARIVALDLKTGDVVWRKKID 166

Query: 148 ---AGEA-LSRPVVSDGLVLIHTSNGQ------LQALNEADGAVKW 183
              AG +  + P++ +GLV+   S G+      ++A +   G + W
Sbjct: 167 DYKAGYSYTAAPLIVNGLVVTGNSGGEFGIVGAVEARDAETGELVW 212



 Score = 38.5 bits (88), Expect = 5e-07
 Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 11/113 (9%)

Query: 76  DRAGLVKALNADDGKEIWSVNLAEKDGWFSKDPALLSGGVTVSGGHVYIGSEKAQVYALN 135
           D  G +KA++ D  +  W          +  D  L SG +T +GG V+ G+ + +  AL+
Sbjct: 465 DHIGAIKAIDPDTMETKWV---------YKNDAPLWSGVMTTAGGLVFFGTPEGEFIALD 515

Query: 136 TSDGTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVN 186
              G   W  +     + +P+    DG   +   +G   A+    G V   VN
Sbjct: 516 DETGEKLWSFQTGSGIVGQPITWEQDGEQYVSVISGWGGAVPLWGGEVAKKVN 568



 Score = 36.6 bits (83), Expect = 2e-06
 Identities = 22/123 (17%), Positives = 55/123 (44%), Gaps = 15/123 (12%)

Query: 248 DTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFI-----------VDGNRI 296
           +T P++ +G+++       + A+D+ +G+ +W+ +       +           + G++ 
Sbjct: 81  ETQPLIYDGIMYITGSYSRVYAIDVETGKEIWQYDARLPEGILPCCDVINRGGAIYGDKF 140

Query: 297 YLVDQNDRVMALTIDGGVTLWTQS----DLLHRLLTSPVLYNGNLVVGDSEGYLHWINVE 352
           Y    + R++AL +  G  +W +        +    +P++ NG +V G+S G    +   
Sbjct: 141 YFGTLDARIVALDLKTGDVVWRKKIDDYKAGYSYTAAPLIVNGLVVTGNSGGEFGIVGAV 200

Query: 353 DGR 355
           + R
Sbjct: 201 EAR 203