Pairwise Alignments

Query, 392 a.a., outer membrane protein assembly factor BamB from Escherichia coli ECOR38

Subject, 450 a.a., Pyrrolo-quinoline quinone (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 96.7 bits (239), Expect = 1e-24
 Identities = 85/352 (24%), Positives = 136/352 (38%), Gaps = 19/352 (5%)

Query: 47  AWSTSVGSGIGNFYS-NLHPALADNVVYAADRAGLVKALNADDGKEIWSVNLAEKDGWFS 105
           AW   +G G          P ++D  V+  D    V A   + G  +W  +L       +
Sbjct: 99  AWRAEIGEGSTRRNRITAAPVVSDGRVFTLDSLATVSAFGTN-GALLWQQDLTPPTD--A 155

Query: 106 KDPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIH 165
            D     GG+ VSG  +Y+ S    + ALN  DGT  W  ++         V   +    
Sbjct: 156 PDEGT-GGGLAVSGDTLYVSSGFGSLTALNVVDGTERWTQRMDAPISGSATVEGNVAYAV 214

Query: 166 TSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPATAFGAAVVGGDNGRVSAVLMEQGQ 225
           + +    AL+  +G V WT+     + S+ G  APA      ++   +  +S  L + G 
Sbjct: 215 SRDSVAWALDTRNGRVLWTLPGVPSTTSILGGGAPALTDRLVILPFPSSEISGALRQSGV 274

Query: 226 MIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS 285
            IW   +S A         SD+++ PVVV   +FA    G + ALD  SG+ +W    G+
Sbjct: 275 RIWGSAVSGARLGRGYTAFSDINSDPVVVGRRIFAGNAAGRVAALDAVSGERLWTAREGA 334

Query: 286 VNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWT------QSDLLHRLLT-----SPVLYN 334
                  G  ++ V   + ++ +  D G   W         D   R         PVL  
Sbjct: 335 FGPVWPAGGELFFVSDQNGLVRMDADTGAVTWIVQLPYYTDDRERRRKAIFAHYGPVLAG 394

Query: 335 GNLVVGDSEGYLHWINVEDGRFVAQQKVD-SSGFQTEPVAADGKLLIQAKDG 385
           G L++   +G L   +   G  + Q ++    G    PV A+  L +    G
Sbjct: 395 GRLIIASGDGRLRLFDPVSG--LPQGEIALPDGAAAPPVVANRTLYVVTTGG 444



 Score = 32.3 bits (72), Expect = 3e-05
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 3/103 (2%)

Query: 73  YAADRAGLVKALNADDGKEIWSVNLA--EKDGWFSKDPALLSGGVTVSGGHVYIGSEKAQ 130
           + +D+ GLV+ ++AD G   W V L     D    +       G  ++GG + I S   +
Sbjct: 347 FVSDQNGLVR-MDADTGAVTWIVQLPYYTDDRERRRKAIFAHYGPVLAGGRLIIASGDGR 405

Query: 131 VYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHTSNGQLQA 173
           +   +   G    +  +   A + PVV++  + + T+ G+L A
Sbjct: 406 LRLFDPVSGLPQGEIALPDGAAAPPVVANRTLYVVTTGGELLA 448